{"id":"https://openalex.org/W4386983969","doi":"https://doi.org/10.1093/bioinformatics/btad596","title":"DeepCCI: a deep learning framework for identifying cell\u2013cell interactions from single-cell RNA sequencing data","display_name":"DeepCCI: a deep learning framework for identifying cell\u2013cell interactions from single-cell RNA sequencing data","publication_year":2023,"publication_date":"2023-09-23","ids":{"openalex":"https://openalex.org/W4386983969","doi":"https://doi.org/10.1093/bioinformatics/btad596","pmid":"https://pubmed.ncbi.nlm.nih.gov/37740953"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad596","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad596","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad596/51734143/btad596.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad596/51734143/btad596.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016451520","display_name":"Wenyi Yang","orcid":"https://orcid.org/0009-0008-1176-0343"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenyi Yang","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100754138","display_name":"Pingping Wang","orcid":"https://orcid.org/0000-0001-8888-8005"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pingping Wang","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100634636","display_name":"Meng Luo","orcid":"https://orcid.org/0000-0003-0622-9060"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Luo","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010917006","display_name":"Yideng Cai","orcid":"https://orcid.org/0000-0003-3820-1804"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yideng Cai","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110771712","display_name":"Chang Xu","orcid":"https://orcid.org/0000-0002-5659-6654"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chang Xu","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040431394","display_name":"Guangfu Xue","orcid":"https://orcid.org/0000-0002-5718-2314"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangfu Xue","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040655235","display_name":"Xiyun Jin","orcid":"https://orcid.org/0000-0003-2795-6451"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiyun Jin","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080005655","display_name":"Rui Cheng","orcid":"https://orcid.org/0000-0002-9398-3514"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Cheng","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001004879","display_name":"Jinhao Que","orcid":"https://orcid.org/0000-0002-6129-9128"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinhao Que","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028190287","display_name":"Fenglan Pang","orcid":"https://orcid.org/0000-0002-9889-3964"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fenglan Pang","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101645703","display_name":"Yuexin Yang","orcid":"https://orcid.org/0000-0002-9933-5489"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuexin Yang","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101821612","display_name":"Huan Nie","orcid":"https://orcid.org/0000-0001-9221-1283"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Nie","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111044526","display_name":"Qinghua Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinghua Jiang","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100398407","display_name":"Zhigang Liu","orcid":"https://orcid.org/0000-0002-6863-6561"},"institutions":[{"id":"https://openalex.org/I58200834","display_name":"Southern Medical University","ror":"https://ror.org/01vjw4z39","country_code":"CN","type":"education","lineage":["https://openalex.org/I58200834"]},{"id":"https://openalex.org/I4210098387","display_name":"Foshan Maternity and Child Health Care Hospital","ror":"https://ror.org/00rg8e315","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210098387"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhigang Liu","raw_affiliation_strings":["Affiliated Foshan Maternity & Child Healthcare Hospital, Southern Medical University , Guangzhou 510515, China"],"affiliations":[{"raw_affiliation_string":"Affiliated Foshan Maternity & Child Healthcare Hospital, Southern Medical University , Guangzhou 510515, China","institution_ids":["https://openalex.org/I4210098387","https://openalex.org/I58200834"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018722475","display_name":"Zhaochun Xu","orcid":"https://orcid.org/0000-0003-1799-5529"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaochun Xu","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology , Harbin 150006, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5016451520"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.4275,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.95054881,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"39","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9779999852180481,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7021207213401794},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6360160112380981},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.537870466709137},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5289608836174011},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4520131051540375},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34028348326683044},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3318275213241577},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07316261529922485}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7021207213401794},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6360160112380981},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.537870466709137},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5289608836174011},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4520131051540375},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34028348326683044},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3318275213241577},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07316261529922485},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad596","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad596","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad596/51734143/btad596.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37740953","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37740953","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10558043","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10558043","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10558043/pdf/btad596.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad596","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad596","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad596/51734143/btad596.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.41999998688697815,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1728692201","display_name":null,"funder_award_id":"T2325009","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2656599839","display_name":null,"funder_award_id":"32270786","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4342416140","display_name":null,"funder_award_id":"32270789","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6392150659","display_name":null,"funder_award_id":"2022ZD0117700","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6549098544","display_name":null,"funder_award_id":"62032007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4386983969.pdf"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1770761733","https://openalex.org/W1989036001","https://openalex.org/W2021263701","https://openalex.org/W2027859544","https://openalex.org/W2036428241","https://openalex.org/W2063759812","https://openalex.org/W2084547941","https://openalex.org/W2115084263","https://openalex.org/W2117690122","https://openalex.org/W2147785707","https://openalex.org/W2324349273","https://openalex.org/W2612758576","https://openalex.org/W2782146634","https://openalex.org/W2785854718","https://openalex.org/W2794480084","https://openalex.org/W2803656008","https://openalex.org/W2884561390","https://openalex.org/W2885499809","https://openalex.org/W2889446142","https://openalex.org/W2890725238","https://openalex.org/W2908139053","https://openalex.org/W2951381561","https://openalex.org/W2951506174","https://openalex.org/W2990706490","https://openalex.org/W2995703197","https://openalex.org/W3001674725","https://openalex.org/W3004512212","https://openalex.org/W3005233576","https://openalex.org/W3007935255","https://openalex.org/W3010299674","https://openalex.org/W3012498554","https://openalex.org/W3030149588","https://openalex.org/W3041614402","https://openalex.org/W3044352330","https://openalex.org/W3044655511","https://openalex.org/W3092295864","https://openalex.org/W3092318937","https://openalex.org/W3093617229","https://openalex.org/W3094645479","https://openalex.org/W3099810371","https://openalex.org/W3115965171","https://openalex.org/W3132661792","https://openalex.org/W3138479716","https://openalex.org/W3139223331","https://openalex.org/W3171692328","https://openalex.org/W3184931457","https://openalex.org/W3197670201","https://openalex.org/W4200565305","https://openalex.org/W4243545763","https://openalex.org/W6742348326","https://openalex.org/W6757519749","https://openalex.org/W6781609492","https://openalex.org/W6792419498","https://openalex.org/W6796091536"],"related_works":["https://openalex.org/W2140798747","https://openalex.org/W2948169060","https://openalex.org/W2730112582","https://openalex.org/W2110696645","https://openalex.org/W2358580169","https://openalex.org/W2111347279","https://openalex.org/W4399426197","https://openalex.org/W2487211728","https://openalex.org/W2378096925","https://openalex.org/W3081644756"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"of":[3],"DeepCCI":[4],"is":[5],"available":[6],"online":[7],"at":[8],"https://github.com/JiangBioLab/DeepCCI.":[9]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":2}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
