{"id":"https://openalex.org/W4386979606","doi":"https://doi.org/10.1093/bioinformatics/btad590","title":"Using a novel structure/function approach to select diverse swine major histocompatibility complex 1 alleles to predict epitopes for vaccine development","display_name":"Using a novel structure/function approach to select diverse swine major histocompatibility complex 1 alleles to predict epitopes for vaccine development","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4386979606","doi":"https://doi.org/10.1093/bioinformatics/btad590","pmid":"https://pubmed.ncbi.nlm.nih.gov/37740287"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad590","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad590","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btad590","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067934760","display_name":"Zahed Khatooni","orcid":null},"institutions":[{"id":"https://openalex.org/I3124704065","display_name":"University of Kurdistan","ror":"https://ror.org/04k89yk85","country_code":"IR","type":"education","lineage":["https://openalex.org/I3124704065"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA","IR"],"is_corresponding":true,"raw_author_name":"Zahed Khatooni","raw_affiliation_strings":["Department of Computer Science, University of Kurdistan , Sanandaj, Iran","Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan , Saskatoon, SK S7N 5E3, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Kurdistan , Sanandaj, Iran","institution_ids":["https://openalex.org/I3124704065"]},{"raw_affiliation_string":"Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan , Saskatoon, SK S7N 5E3, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069325607","display_name":"Navid Teymourian","orcid":"https://orcid.org/0000-0002-5535-2439"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Navid Teymourian","raw_affiliation_strings":["Department of Veterinary Microbiology, Western College of Veterinary Medicine, University of Saskatchewan , Saskatoon, SK S7N 5B4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Veterinary Microbiology, Western College of Veterinary Medicine, University of Saskatchewan , Saskatoon, SK S7N 5B4, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002970194","display_name":"Heather L. Wilson","orcid":"https://orcid.org/0000-0002-1261-0901"},"institutions":[{"id":"https://openalex.org/I3124704065","display_name":"University of Kurdistan","ror":"https://ror.org/04k89yk85","country_code":"IR","type":"education","lineage":["https://openalex.org/I3124704065"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA","IR"],"is_corresponding":false,"raw_author_name":"Heather L Wilson","raw_affiliation_strings":["Department of Computer Science, University of Kurdistan , Sanandaj, Iran","Department of Veterinary Microbiology, Western College of Veterinary Medicine, University of Saskatchewan , Saskatoon, SK S7N 5B4, Canada","Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan , Saskatoon, SK S7N 5E3, Canada","Vaccinology & Immunotherapeutics Program, School of Public Health, University of Saskatchewan , Saskatoon, SK S7N 5B4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Kurdistan , Sanandaj, Iran","institution_ids":["https://openalex.org/I3124704065"]},{"raw_affiliation_string":"Department of Veterinary Microbiology, Western College of Veterinary Medicine, University of Saskatchewan , Saskatoon, SK S7N 5B4, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan , Saskatoon, SK S7N 5E3, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Vaccinology & Immunotherapeutics Program, School of Public Health, University of Saskatchewan , Saskatoon, SK S7N 5B4, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5067934760"],"corresponding_institution_ids":["https://openalex.org/I3124704065","https://openalex.org/I32625721"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6069,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.70449692,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"39","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11560","display_name":"Animal Disease Management and Epidemiology","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9338537454605103},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6398083567619324},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.6240603923797607},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5880733728408813},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5857404470443726},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.5845917463302612},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.5478389859199524},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.4896996319293976},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4827220141887665},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.43781882524490356},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.34896227717399597},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.31941717863082886},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1585245132446289},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09304344654083252},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06814643740653992}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9338537454605103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6398083567619324},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.6240603923797607},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5880733728408813},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5857404470443726},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.5845917463302612},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.5478389859199524},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.4896996319293976},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4827220141887665},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.43781882524490356},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.34896227717399597},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.31941717863082886},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1585245132446289},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09304344654083252},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06814643740653992},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000087506","descriptor_name":"Vaccine Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad590","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad590","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37740287","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37740287","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10551226","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10551226","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10551226/pdf/btad590.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad590","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad590","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5799594176","display_name":null,"funder_award_id":"20210690","funder_id":"https://openalex.org/F4320310866","funder_display_name":"Ministry of Agriculture - Saskatchewan"}],"funders":[{"id":"https://openalex.org/F4320310865","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63"},{"id":"https://openalex.org/F4320310866","display_name":"Ministry of Agriculture - Saskatchewan","ror":"https://ror.org/02g5xq267"},{"id":"https://openalex.org/F4320315602","display_name":"Innovation Saskatchewan","ror":null},{"id":"https://openalex.org/F4320331257","display_name":"Alliance de recherche num\u00e9rique du Canada","ror":"https://ror.org/010r6td27"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1938743025","https://openalex.org/W1948562438","https://openalex.org/W1985081769","https://openalex.org/W1991542542","https://openalex.org/W2004902129","https://openalex.org/W2019711015","https://openalex.org/W2024150829","https://openalex.org/W2034694458","https://openalex.org/W2035266068","https://openalex.org/W2057477511","https://openalex.org/W2060872117","https://openalex.org/W2067174909","https://openalex.org/W2081693079","https://openalex.org/W2086480198","https://openalex.org/W2095036253","https://openalex.org/W2110574412","https://openalex.org/W2110694683","https://openalex.org/W2128572087","https://openalex.org/W2129434797","https://openalex.org/W2142739377","https://openalex.org/W2147640195","https://openalex.org/W2154019529","https://openalex.org/W2164507619","https://openalex.org/W2171268876","https://openalex.org/W2271914738","https://openalex.org/W2399270745","https://openalex.org/W2466210007","https://openalex.org/W2530596726","https://openalex.org/W2555870966","https://openalex.org/W2731784911","https://openalex.org/W2737053629","https://openalex.org/W2799876761","https://openalex.org/W2804822363","https://openalex.org/W2896801517","https://openalex.org/W2903373249","https://openalex.org/W2918013093","https://openalex.org/W2981561147","https://openalex.org/W2987107292","https://openalex.org/W2987335406","https://openalex.org/W2995039599","https://openalex.org/W2999562335","https://openalex.org/W3024570138","https://openalex.org/W3083804123","https://openalex.org/W3125756628","https://openalex.org/W3160293921","https://openalex.org/W3185197558","https://openalex.org/W3215519285","https://openalex.org/W4212967725","https://openalex.org/W6679426135","https://openalex.org/W6770113330"],"related_works":["https://openalex.org/W2130031978","https://openalex.org/W2090149287","https://openalex.org/W2381567441","https://openalex.org/W3043724143","https://openalex.org/W3111171798","https://openalex.org/W2336465572","https://openalex.org/W1963735212","https://openalex.org/W2399953650","https://openalex.org/W3197423116","https://openalex.org/W1966343877"],"abstract_inverted_index":{"The":[0],"data":[1],"underlying":[2],"this":[3],"article":[4],"are":[5],"available":[6],"in":[7],"the":[8],"online":[9],"Supplementary":[10],"Material.":[11]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
