{"id":"https://openalex.org/W4386979582","doi":"https://doi.org/10.1093/bioinformatics/btad582","title":"GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype","display_name":"GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype","publication_year":2023,"publication_date":"2023-09-22","ids":{"openalex":"https://openalex.org/W4386979582","doi":"https://doi.org/10.1093/bioinformatics/btad582","pmid":"https://pubmed.ncbi.nlm.nih.gov/37740295"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad582","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad582","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad582/51728118/btad582.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad582/51728118/btad582.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008209989","display_name":"Dabin Jeong","orcid":"https://orcid.org/0000-0001-9910-8051"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Dabin Jeong","raw_affiliation_strings":["Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08826, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08826, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053984487","display_name":"Bonil Koo","orcid":"https://orcid.org/0000-0003-4357-1850"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Bonil Koo","raw_affiliation_strings":["AIGENDRUG Co., Ltd , Seoul 08826, Republic of Korea","Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08826, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"AIGENDRUG Co., Ltd , Seoul 08826, Republic of Korea","institution_ids":[]},{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08826, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102859737","display_name":"Minsik Oh","orcid":"https://orcid.org/0000-0003-4170-1543"},"institutions":[{"id":"https://openalex.org/I89440247","display_name":"Myongji University","ror":"https://ror.org/00s9dpb54","country_code":"KR","type":"education","lineage":["https://openalex.org/I89440247"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Minsik Oh","raw_affiliation_strings":["School of Software Convergence, Myongji University , Seoul 03674, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"School of Software Convergence, Myongji University , Seoul 03674, Republic of Korea","institution_ids":["https://openalex.org/I89440247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090224826","display_name":"Tae\u2010Bum Kim","orcid":"https://orcid.org/0000-0001-5663-0640"},"institutions":[{"id":"https://openalex.org/I116631150","display_name":"Ulsan College","ror":"https://ror.org/02tec3785","country_code":"KR","type":"education","lineage":["https://openalex.org/I116631150"]},{"id":"https://openalex.org/I2801680663","display_name":"Asan Medical Center","ror":"https://ror.org/03s5q0090","country_code":"KR","type":"healthcare","lineage":["https://openalex.org/I2801680663","https://openalex.org/I4210167194"]},{"id":"https://openalex.org/I40542001","display_name":"University of Ulsan","ror":"https://ror.org/02c2f8975","country_code":"KR","type":"education","lineage":["https://openalex.org/I40542001"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Tae-Bum Kim","raw_affiliation_strings":["Department of Allergy and Clinical Immunology, Asan Medical Center, University of Ulsan College of Medicine , Seoul 05505, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Allergy and Clinical Immunology, Asan Medical Center, University of Ulsan College of Medicine , Seoul 05505, Republic of Korea","institution_ids":["https://openalex.org/I2801680663","https://openalex.org/I40542001","https://openalex.org/I116631150"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100460439","display_name":"\ufeffSun Kim","orcid":"https://orcid.org/0000-0001-5385-9546"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sun Kim","raw_affiliation_strings":["AIGENDRUG Co., Ltd , Seoul 08826, Republic of Korea","Department of Computer Science and Engineering, Seoul National University , Seoul 08826, Republic of Korea","Interdisciplinary Program in Artificial Intelligence,, Seoul National University , Seoul 08826, Republic of Korea","Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08826, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"AIGENDRUG Co., Ltd , Seoul 08826, Republic of Korea","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Seoul National University , Seoul 08826, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Interdisciplinary Program in Artificial Intelligence,, Seoul National University , Seoul 08826, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08826, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008209989"],"corresponding_institution_ids":["https://openalex.org/I139264467"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.9879,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.91946348,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"39","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10051","display_name":"Asthma and respiratory diseases","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10051","display_name":"Asthma and respiratory diseases","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12528","display_name":"IL-33, ST2, and ILC Pathways","score":0.9649999737739563,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9207000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.7147499322891235},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.6656018495559692},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.5043221712112427},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.504172682762146},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.45048049092292786},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.403641015291214},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.39688557386398315},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36707550287246704},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3207554221153259},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.22434142231941223},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.18450406193733215},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13084912300109863},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11099684238433838}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.7147499322891235},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.6656018495559692},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.5043221712112427},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.504172682762146},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.45048049092292786},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.403641015291214},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39688557386398315},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36707550287246704},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3207554221153259},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.22434142231941223},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.18450406193733215},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13084912300109863},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11099684238433838}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001249","descriptor_name":"Asthma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001249","descriptor_name":"Asthma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001249","descriptor_name":"Asthma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006041","descriptor_name":"Goats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006041","descriptor_name":"Goats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006041","descriptor_name":"Goats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad582","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad582","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad582/51728118/btad582.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37740295","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37740295","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10547929","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10547929","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10547929/pdf/btad582.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad582","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad582","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad582/51728118/btad582.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.7300000190734863}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4386979582.pdf"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1987219048","https://openalex.org/W1997089052","https://openalex.org/W2007517602","https://openalex.org/W2011353053","https://openalex.org/W2021701428","https://openalex.org/W2050460305","https://openalex.org/W2116662982","https://openalex.org/W2117968640","https://openalex.org/W2149018921","https://openalex.org/W2163485494","https://openalex.org/W2172196619","https://openalex.org/W2189718725","https://openalex.org/W2537623931","https://openalex.org/W2586238008","https://openalex.org/W2611138580","https://openalex.org/W2624021832","https://openalex.org/W2743400982","https://openalex.org/W2750780970","https://openalex.org/W2776546488","https://openalex.org/W2790295707","https://openalex.org/W2808845633","https://openalex.org/W2892016825","https://openalex.org/W2909472027","https://openalex.org/W2938162732","https://openalex.org/W2944589418","https://openalex.org/W2958002629","https://openalex.org/W2980873162","https://openalex.org/W3039768613","https://openalex.org/W3096841710","https://openalex.org/W3125330584","https://openalex.org/W3127832135","https://openalex.org/W3135499953","https://openalex.org/W3170986249","https://openalex.org/W3184473427","https://openalex.org/W3186707979","https://openalex.org/W3199417889","https://openalex.org/W3208624098","https://openalex.org/W4223464414","https://openalex.org/W4280650375","https://openalex.org/W4292053589","https://openalex.org/W4380853828"],"related_works":["https://openalex.org/W2218259209","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W2096326357","https://openalex.org/W4210973372","https://openalex.org/W2108949684","https://openalex.org/W4223912550","https://openalex.org/W2012655824","https://openalex.org/W1965976436","https://openalex.org/W2281038790"],"abstract_inverted_index":{"Source":[0],"code":[1],"is":[2,11],"available":[3,23],"https://github.com/DabinJeong/Multi-omics_biomarker.":[4],"The":[5],"preprocessed":[6],"data":[7,14,21],"underlying":[8],"this":[9],"article":[10],"accessible":[12,33],"in":[13,24],"folder":[15],"of":[16],"the":[17],"github":[18],"repository.":[19],"Raw":[20],"are":[22],"Multi-Omics":[25],"Platform":[26],"at":[27],"http://203.252.206.90:5566/,":[28],"and":[29],"it":[30],"can":[31],"be":[32],"when":[34],"requested.":[35]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":5}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
