{"id":"https://openalex.org/W4367835336","doi":"https://doi.org/10.1093/bioinformatics/btad570","title":"BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs","display_name":"BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs","publication_year":2023,"publication_date":"2023-09-01","ids":{"openalex":"https://openalex.org/W4367835336","doi":"https://doi.org/10.1093/bioinformatics/btad570","pmid":"https://pubmed.ncbi.nlm.nih.gov/37131885"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad570","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad570","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad570/51553552/btad570.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad570/51553552/btad570.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010793574","display_name":"Jackson Callaghan","orcid":"https://orcid.org/0000-0001-7627-2086"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jackson Callaghan","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026748072","display_name":"Colleen Xu","orcid":"https://orcid.org/0000-0003-2975-882X"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Colleen H Xu","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073909247","display_name":"Jiwen Xin","orcid":"https://orcid.org/0000-0001-8140-0556"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiwen Xin","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013316336","display_name":"Marco Alvarado Cano","orcid":"https://orcid.org/0000-0001-6992-8390"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marco Alvarado Cano","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064769212","display_name":"Anders Riutta","orcid":"https://orcid.org/0000-0002-4693-0591"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anders Riutta","raw_affiliation_strings":["Data Science and Biotechnology, Gladstone Institutes, University of California , San Francisco, CA 94158, United States"],"affiliations":[{"raw_affiliation_string":"Data Science and Biotechnology, Gladstone Institutes, University of California , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I1321430492","https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081575577","display_name":"Eric S. Zhou","orcid":"https://orcid.org/0000-0003-1038-8961"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Zhou","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066607195","display_name":"Rohan Juneja","orcid":"https://orcid.org/0000-0002-6015-1084"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rohan Juneja","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100389441","display_name":"Yao Yao","orcid":"https://orcid.org/0000-0002-8218-8638"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yao Yao","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016496775","display_name":"Madhumita Narayan","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Madhumita Narayan","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063972221","display_name":"Kristina Hanspers","orcid":"https://orcid.org/0000-0001-5410-599X"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristina Hanspers","raw_affiliation_strings":["Data Science and Biotechnology, Gladstone Institutes, University of California , San Francisco, CA 94158, United States"],"affiliations":[{"raw_affiliation_string":"Data Science and Biotechnology, Gladstone Institutes, University of California , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I1321430492","https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045654542","display_name":"Ayushi Agrawal","orcid":"https://orcid.org/0000-0003-2940-8926"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ayushi Agrawal","raw_affiliation_strings":["Data Science and Biotechnology, Gladstone Institutes, University of California , San Francisco, CA 94158, United States"],"affiliations":[{"raw_affiliation_string":"Data Science and Biotechnology, Gladstone Institutes, University of California , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I1321430492","https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070456387","display_name":"Alexander R. Pico","orcid":"https://orcid.org/0000-0001-5706-2163"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander R Pico","raw_affiliation_strings":["Data Science and Biotechnology, Gladstone Institutes, University of California , San Francisco, CA 94158, United States"],"affiliations":[{"raw_affiliation_string":"Data Science and Biotechnology, Gladstone Institutes, University of California , San Francisco, CA 94158, United States","institution_ids":["https://openalex.org/I1321430492","https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018169284","display_name":"Chunlei Wu","orcid":"https://orcid.org/0000-0002-2629-6124"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunlei Wu","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045408201","display_name":"Andrew I. Su","orcid":"https://orcid.org/0000-0002-9859-4104"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew I Su","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, CA 92037, United States","institution_ids":["https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5010793574"],"corresponding_institution_ids":["https://openalex.org/I123431417"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.2181,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.78931125,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"39","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.979200005531311,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8736094236373901},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.44980281591415405},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.44878295063972473},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4188830852508545},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.24477091431617737}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8736094236373901},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.44980281591415405},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.44878295063972473},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4188830852508545},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.24477091431617737}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btad570","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad570","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad570/51553552/btad570.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37131885","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37131885","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ArXiv","raw_type":null},{"id":"pmid:37707514","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37707514","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10153288","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10153288","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10153288/pdf/nihpp-2304.09344v1.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ArXiv","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11015316","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11015316","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11015316/pdf/btad570.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad570","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad570","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad570/51553552/btad570.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1120017244","display_name":null,"funder_award_id":"OT2TR003445","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G1280353882","display_name":null,"funder_award_id":"OT2TR003427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6674681112","display_name":null,"funder_award_id":"OT2TR003427","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4367835336.pdf"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W2158304452","https://openalex.org/W2165897980","https://openalex.org/W2558643140","https://openalex.org/W2610569243","https://openalex.org/W2949311246","https://openalex.org/W3033896008","https://openalex.org/W3159726507","https://openalex.org/W4205440179","https://openalex.org/W4220796461","https://openalex.org/W4226138412","https://openalex.org/W4226147497","https://openalex.org/W4281481995","https://openalex.org/W4281704579","https://openalex.org/W4297458751","https://openalex.org/W4298005542","https://openalex.org/W4319813194","https://openalex.org/W6810140457"],"related_works":["https://openalex.org/W2357241418","https://openalex.org/W2086064646","https://openalex.org/W2346234991","https://openalex.org/W2119135658","https://openalex.org/W4286435951","https://openalex.org/W2115485936","https://openalex.org/W3022131925","https://openalex.org/W2792377126","https://openalex.org/W2349174110","https://openalex.org/W1597238586"],"abstract_inverted_index":{"Knowledge":[0],"graphs":[1,14,35,62],"are":[2,63],"an":[3,80],"increasingly":[4],"common":[5],"data":[6,70],"structure":[7],"for":[8,28,113],"representing":[9],"biomedical":[10,99],"information.":[11],"These":[12],"knowledge":[13,34,61,88,135],"can":[15,83,156],"easily":[16],"represent":[17],"heterogeneous":[18],"types":[19],"of":[20,42,48,52,69,98,108,120],"information,":[21],"and":[22,25,30,56,67,111,116,161],"many":[23],"algorithms":[24],"tools":[26],"exist":[27],"querying":[29],"analyzing":[31],"graphs.":[32],"Biomedical":[33],"have":[36],"been":[37],"used":[38],"in":[39,95],"a":[40,85,96,144],"variety":[41],"applications,":[43],"including":[44],"drug":[45,49,53],"repurposing,":[46],"identification":[47],"targets,":[50],"prediction":[51],"side":[54],"effects,":[55],"clinical":[57],"decision":[58],"support.":[59],"Typically,":[60],"constructed":[64],"by":[65],"centralization":[66],"integration":[68],"from":[71,91],"multiple":[72],"disparate":[73],"sources.":[74],"Here,":[75],"we":[76],"describe":[77],"BioThings":[78,102],"Explorer,":[79],"application":[81,146],"that":[82,147],"query":[84,152],"virtual,":[86],"federated":[87],"graph":[89,127,136],"derived":[90],"the":[92,109,118],"aggregated":[93],"information":[94,150,155],"network":[97],"web":[100,121],"services.":[101],"Explorer":[103,140],"leverages":[104],"semantically":[105],"precise":[106],"annotations":[107],"inputs":[110],"outputs":[112],"each":[114],"resource,":[115],"automates":[117],"chaining":[119],"service":[122],"calls":[123],"to":[124,137],"execute":[125],"multi-step":[126],"queries.":[128],"Because":[129],"there":[130],"is":[131,141,163],"no":[132],"large,":[133],"centralized":[134],"maintain,":[138],"BioThing":[139],"distributed":[142],"as":[143],"lightweight":[145],"dynamically":[148],"retrieves":[149],"at":[151,159,165],"time.":[153],"More":[154],"be":[157],"found":[158],"https://explorer.biothings.io,":[160],"code":[162],"available":[164],"https://github.com/biothings/biothings_explorer.":[166]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2023-05-04T00:00:00"}