{"id":"https://openalex.org/W4386530347","doi":"https://doi.org/10.1093/bioinformatics/btad557","title":"An extensive benchmark study on biomedical text generation and mining with ChatGPT","display_name":"An extensive benchmark study on biomedical text generation and mining with ChatGPT","publication_year":2023,"publication_date":"2023-09-01","ids":{"openalex":"https://openalex.org/W4386530347","doi":"https://doi.org/10.1093/bioinformatics/btad557","pmid":"https://pubmed.ncbi.nlm.nih.gov/37682111"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad557","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad557","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad557/51971197/btad557.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad557/51971197/btad557.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103233216","display_name":"Qijie Chen","orcid":"https://orcid.org/0000-0003-0661-652X"},"institutions":[{"id":"https://openalex.org/I4210137922","display_name":"Mind Australia","ror":"https://ror.org/03p0xnn24","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210137922"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Qijie Chen","raw_affiliation_strings":["AIDD, Mindrank AI Ltd , Zhejiang 310000, China"],"affiliations":[{"raw_affiliation_string":"AIDD, Mindrank AI Ltd , Zhejiang 310000, China","institution_ids":["https://openalex.org/I4210137922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070900113","display_name":"Haotong Sun","orcid":"https://orcid.org/0000-0001-9048-2215"},"institutions":[{"id":"https://openalex.org/I4210137922","display_name":"Mind Australia","ror":"https://ror.org/03p0xnn24","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210137922"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Haotong Sun","raw_affiliation_strings":["AIDD, Mindrank AI Ltd , Zhejiang 310000, China"],"affiliations":[{"raw_affiliation_string":"AIDD, Mindrank AI Ltd , Zhejiang 310000, China","institution_ids":["https://openalex.org/I4210137922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101443035","display_name":"Haoyang Liu","orcid":"https://orcid.org/0000-0003-2027-7501"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoyang Liu","raw_affiliation_strings":["College of Life Sciences, Nankai University , Tianjin 300071, China","Guangzhou Laboratory , GuangDong 510005, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Nankai University , Tianjin 300071, China","institution_ids":["https://openalex.org/I205237279"]},{"raw_affiliation_string":"Guangzhou Laboratory , GuangDong 510005, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045247136","display_name":"Yinghui Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137922","display_name":"Mind Australia","ror":"https://ror.org/03p0xnn24","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210137922"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yinghui Jiang","raw_affiliation_strings":["AIDD, Mindrank AI Ltd , Zhejiang 310000, China"],"affiliations":[{"raw_affiliation_string":"AIDD, Mindrank AI Ltd , Zhejiang 310000, China","institution_ids":["https://openalex.org/I4210137922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028137045","display_name":"Ting Ran","orcid":"https://orcid.org/0000-0002-1387-4634"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ting Ran","raw_affiliation_strings":["Guangzhou Laboratory , GuangDong 510005, China"],"affiliations":[{"raw_affiliation_string":"Guangzhou Laboratory , GuangDong 510005, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003091992","display_name":"Xurui Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137922","display_name":"Mind Australia","ror":"https://ror.org/03p0xnn24","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210137922"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Xurui Jin","raw_affiliation_strings":["AIDD, Mindrank AI Ltd , Zhejiang 310000, China"],"affiliations":[{"raw_affiliation_string":"AIDD, Mindrank AI Ltd , Zhejiang 310000, China","institution_ids":["https://openalex.org/I4210137922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088846231","display_name":"Xianglu Xiao","orcid":"https://orcid.org/0000-0002-8648-6245"},"institutions":[{"id":"https://openalex.org/I4210137922","display_name":"Mind Australia","ror":"https://ror.org/03p0xnn24","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210137922"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Xianglu Xiao","raw_affiliation_strings":["AIDD, Mindrank AI Ltd , Zhejiang 310000, China"],"affiliations":[{"raw_affiliation_string":"AIDD, Mindrank AI Ltd , Zhejiang 310000, China","institution_ids":["https://openalex.org/I4210137922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100915435","display_name":"Zhimin Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137922","display_name":"Mind Australia","ror":"https://ror.org/03p0xnn24","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210137922"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Zhimin Lin","raw_affiliation_strings":["AIDD, Mindrank AI Ltd , Zhejiang 310000, China"],"affiliations":[{"raw_affiliation_string":"AIDD, Mindrank AI Ltd , Zhejiang 310000, China","institution_ids":["https://openalex.org/I4210137922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100729958","display_name":"Hongming Chen","orcid":"https://orcid.org/0000-0003-0966-8608"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hongming Chen","raw_affiliation_strings":["Guangzhou Laboratory , GuangDong 510005, China"],"affiliations":[{"raw_affiliation_string":"Guangzhou Laboratory , GuangDong 510005, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112996597","display_name":"Zhangmin Niu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137922","display_name":"Mind Australia","ror":"https://ror.org/03p0xnn24","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210137922"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["AU","GB"],"is_corresponding":false,"raw_author_name":"Zhangmin Niu","raw_affiliation_strings":["AIDD, Mindrank AI Ltd , Zhejiang 310000, China","National Heart and Lung Institute, Imperial College London , London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"AIDD, Mindrank AI Ltd , Zhejiang 310000, China","institution_ids":["https://openalex.org/I4210137922"]},{"raw_affiliation_string":"National Heart and Lung Institute, Imperial College London , London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5103233216"],"corresponding_institution_ids":["https://openalex.org/I4210137922"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":16.1812,"has_fulltext":true,"cited_by_count":93,"citation_normalized_percentile":{"value":0.99408509,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"39","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.8293771743774414},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.755839467048645},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6976338624954224},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6663127541542053},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6196142435073853},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.597069263458252},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5378678441047668},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5290274620056152},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.48195669054985046},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.4727776050567627},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.4497305750846863},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4279373288154602},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.41493475437164307},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.4113858938217163},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34532690048217773},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.3279898464679718},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24048638343811035},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.2106267213821411},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1316145658493042},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09357234835624695}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.8293771743774414},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.755839467048645},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6976338624954224},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6663127541542053},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6196142435073853},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.597069263458252},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5378678441047668},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5290274620056152},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.48195669054985046},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.4727776050567627},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.4497305750846863},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4279373288154602},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.41493475437164307},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.4113858938217163},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34532690048217773},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.3279898464679718},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24048638343811035},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.2106267213821411},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1316145658493042},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09357234835624695},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098842","descriptor_name":"Generative Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad557","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad557","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad557/51971197/btad557.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37682111","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37682111","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10562950","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10562950","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10562950/pdf/btad557.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad557","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad557","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad557/51971197/btad557.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.8600000143051147}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4386530347.pdf"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W49437421","https://openalex.org/W2048296798","https://openalex.org/W2136437513","https://openalex.org/W2154142897","https://openalex.org/W2169099542","https://openalex.org/W2170189740","https://openalex.org/W2174775663","https://openalex.org/W2346452181","https://openalex.org/W2735784619","https://openalex.org/W2743028754","https://openalex.org/W2964179635","https://openalex.org/W3046375318","https://openalex.org/W3185341429","https://openalex.org/W4226278401","https://openalex.org/W4288089799","https://openalex.org/W4292779060","https://openalex.org/W4320009668","https://openalex.org/W4389437528","https://openalex.org/W6601952396","https://openalex.org/W6704842505","https://openalex.org/W6769627184","https://openalex.org/W6778883912","https://openalex.org/W6781031682","https://openalex.org/W6798057236","https://openalex.org/W6810738896"],"related_works":["https://openalex.org/W2805262146","https://openalex.org/W4379517534","https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W1984061923","https://openalex.org/W2572241437","https://openalex.org/W4379379356"],"abstract_inverted_index":{"All":[0],"the":[1,14],"datasets":[2],"are":[3,11],"available":[4],"from":[5],"BLURB":[6],"benchmark":[7],"https://microsoft.github.io/BLURB/index.html.":[8],"The":[9],"prompts":[10],"described":[12],"in":[13],"article.":[15]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":34},{"year":2024,"cited_by_count":47},{"year":2023,"cited_by_count":6}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
