{"id":"https://openalex.org/W4386529450","doi":"https://doi.org/10.1093/bioinformatics/btad553","title":"ePlatypus: an ecosystem for computational analysis of immunogenomics data","display_name":"ePlatypus: an ecosystem for computational analysis of immunogenomics data","publication_year":2023,"publication_date":"2023-09-01","ids":{"openalex":"https://openalex.org/W4386529450","doi":"https://doi.org/10.1093/bioinformatics/btad553","pmid":"https://pubmed.ncbi.nlm.nih.gov/37682115"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad553","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad553/51741015/btad553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad553/51741015/btad553.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048867307","display_name":"Tudor\u2010Stefan Cotet","orcid":"https://orcid.org/0000-0002-7701-6225"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Tudor-Stefan Cotet","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042596314","display_name":"Andreas Agrafiotis","orcid":"https://orcid.org/0000-0003-0797-4695"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Andreas Agrafiotis","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","Institute of Microbiology, ETH Zurich , Vladimir-Prelog-Weg 4 , Zurich 8093, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-0797-4695","affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Institute of Microbiology, ETH Zurich , Vladimir-Prelog-Weg 4 , Zurich 8093, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022673630","display_name":"Victor Kreiner","orcid":"https://orcid.org/0000-0002-7784-9286"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Victor Kreiner","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103573125","display_name":"Raphael Kuhn","orcid":"https://orcid.org/0000-0002-4068-2048"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Raphael Kuhn","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039015867","display_name":"Danielle Shlesinger","orcid":"https://orcid.org/0000-0001-9719-1023"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Danielle Shlesinger","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033142284","display_name":"Marcos Manero-Carranza","orcid":"https://orcid.org/0000-0002-9986-1411"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marcos Manero-Carranza","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-9986-1411","affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073139491","display_name":"Keywan Khodaverdi","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Keywan Khodaverdi","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003031971","display_name":"Evgenios Kladis","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Evgenios Kladis","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112996576","display_name":"Aurora Desideri Perea","orcid":null},"institutions":[{"id":"https://openalex.org/I3018483916","display_name":"University Medical Center Utrecht","ror":"https://ror.org/0575yy874","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I3018483916"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Aurora Desideri Perea","raw_affiliation_strings":["Center for Translational Immunology, University Medical Center Utrecht , Lundlaan 6 , Utrecht 3584 EA, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Translational Immunology, University Medical Center Utrecht , Lundlaan 6 , Utrecht 3584 EA, The Netherlands","institution_ids":["https://openalex.org/I3018483916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092772460","display_name":"Dylan Maassen-Veeters","orcid":null},"institutions":[{"id":"https://openalex.org/I3018483916","display_name":"University Medical Center Utrecht","ror":"https://ror.org/0575yy874","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I3018483916"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Dylan Maassen-Veeters","raw_affiliation_strings":["Center for Translational Immunology, University Medical Center Utrecht , Lundlaan 6 , Utrecht 3584 EA, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Translational Immunology, University Medical Center Utrecht , Lundlaan 6 , Utrecht 3584 EA, The Netherlands","institution_ids":["https://openalex.org/I3018483916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092772461","display_name":"Wiona Sophie Gl\u00e4nzer","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Wiona Gl\u00e4nzer","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092772462","display_name":"Sol\u00e8ne Massery","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sol\u00e8ne Massery","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089966486","display_name":"Lorenzo Guerci","orcid":"https://orcid.org/0009-0001-8694-6600"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lorenzo Guerci","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079106817","display_name":"Kai\u2010Lin Hong","orcid":"https://orcid.org/0000-0001-5524-5353"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Kai-Lin Hong","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063188430","display_name":"Jiami Han","orcid":"https://orcid.org/0000-0003-4795-1885"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jiami Han","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078291601","display_name":"Kostas Stiklioraitis","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Kostas Stiklioraitis","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092772463","display_name":"Vittoria Martinolli D\u2019Arcy","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Vittoria Martinolli D\u2019Arcy","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033488174","display_name":"Raphael Dizerens","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Raphael Dizerens","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076800268","display_name":"Samuel Kilchenmann","orcid":"https://orcid.org/0000-0001-9997-8233"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Samuel Kilchenmann","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079031517","display_name":"Lucas Stalder","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lucas Stalder","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063725266","display_name":"Leon Nissen","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Leon Nissen","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111036727","display_name":"B. Vogelsanger","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Basil Vogelsanger","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019516842","display_name":"Stine Anzb\u00f6ck","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Stine Anzb\u00f6ck","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017060442","display_name":"Daria Laslo","orcid":"https://orcid.org/0009-0005-8771-144X"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Daria Laslo","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114080680","display_name":"S C Bakker","orcid":null},"institutions":[{"id":"https://openalex.org/I3018483916","display_name":"University Medical Center Utrecht","ror":"https://ror.org/0575yy874","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I3018483916"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sophie Bakker","raw_affiliation_strings":["Center for Translational Immunology, University Medical Center Utrecht , Lundlaan 6 , Utrecht 3584 EA, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Translational Immunology, University Medical Center Utrecht , Lundlaan 6 , Utrecht 3584 EA, The Netherlands","institution_ids":["https://openalex.org/I3018483916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063462120","display_name":"Melinda Kondorosy","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Melinda Kondorosy","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114080681","display_name":"Marco Venerito","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marco Venerito","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070389096","display_name":"Alejandro Sanz Garc\u00eda","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Alejandro Sanz Garc\u00eda","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012356946","display_name":"Isabelle Feller","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Isabelle Feller","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008537578","display_name":"Annette Oxenius","orcid":"https://orcid.org/0000-0002-2079-2354"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Annette Oxenius","raw_affiliation_strings":["Institute of Microbiology, ETH Zurich , Vladimir-Prelog-Weg 4 , Zurich 8093, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Microbiology, ETH Zurich , Vladimir-Prelog-Weg 4 , Zurich 8093, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072818273","display_name":"Sai T. Reddy","orcid":"https://orcid.org/0000-0002-9177-0857"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sai T Reddy","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067719585","display_name":"Alexander Yermanos","orcid":"https://orcid.org/0000-0001-6238-0588"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I3018483916","display_name":"University Medical Center Utrecht","ror":"https://ror.org/0575yy874","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I3018483916"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH","NL"],"is_corresponding":true,"raw_author_name":"Alexander Yermanos","raw_affiliation_strings":["Center for Translational Immunology, University Medical Center Utrecht , Lundlaan 6 , Utrecht 3584 EA, The Netherlands","Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","Department of Pathology and Immunology, University of Geneva , 24 rue du G\u00e9n\u00e9ral-Dufour , Geneva 1211, Switzerland","Institute of Microbiology, ETH Zurich , Vladimir-Prelog-Weg 4 , Zurich 8093, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-6238-0588","affiliations":[{"raw_affiliation_string":"Center for Translational Immunology, University Medical Center Utrecht , Lundlaan 6 , Utrecht 3584 EA, The Netherlands","institution_ids":["https://openalex.org/I3018483916"]},{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Mattenstrasse 26 , Basel 4058, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Department of Pathology and Immunology, University of Geneva , 24 rue du G\u00e9n\u00e9ral-Dufour , Geneva 1211, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Institute of Microbiology, ETH Zurich , Vladimir-Prelog-Weg 4 , Zurich 8093, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5067719585"],"corresponding_institution_ids":["https://openalex.org/I114457229","https://openalex.org/I3018483916","https://openalex.org/I35440088"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.7491,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.84807514,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"39","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9340999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9340999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.039500001817941666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12391","display_name":"Artificial Immune Systems Applications","score":0.003800000064074993,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7493760585784912},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.49865150451660156},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4419098496437073},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4386870265007019},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4125532805919647},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23957914113998413},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2340877652168274},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12093803286552429}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7493760585784912},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.49865150451660156},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4419098496437073},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4386870265007019},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4125532805919647},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23957914113998413},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2340877652168274},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12093803286552429}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010987","descriptor_name":"Platypus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010987","descriptor_name":"Platypus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010987","descriptor_name":"Platypus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad553","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad553/51741015/btad553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37682115","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37682115","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10518073","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10518073","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10518073/pdf/btad553.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:dspace.library.uu.nl:1874/460116","is_oa":true,"landing_page_url":"https://dspace.library.uu.nl/handle/1874/460116","pdf_url":null,"source":{"id":"https://openalex.org/S4306401649","display_name":"Utrecht University Repository (Utrecht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193662353","host_organization_name":"Utrecht University","host_organization_lineage":["https://openalex.org/I193662353"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad553","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad553/51741015/btad553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G5132640529","display_name":null,"funder_award_id":"ID 100010434","funder_id":"https://openalex.org/F4320330256","funder_display_name":"Fundaci\u00f3n Bancaria Caixa d'Estalvis i Pensions de Barcelona"},{"id":"https://openalex.org/G7685134749","display_name":null,"funder_award_id":"100010434","funder_id":"https://openalex.org/F4320330256","funder_display_name":"Fundaci\u00f3n Bancaria Caixa d'Estalvis i Pensions de Barcelona"}],"funders":[{"id":"https://openalex.org/F4320321652","display_name":"Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich","ror":"https://ror.org/05a28rw58"},{"id":"https://openalex.org/F4320330256","display_name":"Fundaci\u00f3n Bancaria Caixa d'Estalvis i Pensions de Barcelona","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4386529450.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W2069089843","https://openalex.org/W2175702062","https://openalex.org/W2752678066","https://openalex.org/W2893410333","https://openalex.org/W2984472267","https://openalex.org/W3002623081","https://openalex.org/W3007935255","https://openalex.org/W3102577481","https://openalex.org/W3128307568","https://openalex.org/W3132753559","https://openalex.org/W3153637039","https://openalex.org/W3162788683","https://openalex.org/W3177828909","https://openalex.org/W3209396962","https://openalex.org/W3213155007","https://openalex.org/W4205773061","https://openalex.org/W4220757565","https://openalex.org/W4225492980","https://openalex.org/W4255658650","https://openalex.org/W4283068487","https://openalex.org/W4293194927","https://openalex.org/W4318020057","https://openalex.org/W4327550249"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W3033622206"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,108],"maturation":[2],"of":[3,14,64,88],"systems":[4],"immunology":[5,30,90,117],"methodologies":[6],"requires":[7],"novel":[8,75],"and":[9,43,52,56,66,76,85,106,118,120],"transparent":[10],"computational":[11,29,89,116],"frameworks":[12],"capable":[13],"integrating":[15],"diverse":[16],"data":[17,34],"modalities":[18],"in":[19,115,130],"a":[20,37],"reproducible":[21],"manner.":[22],"RESULTS:":[23],"Here,":[24],"we":[25],"present":[26],"the":[27,72],"ePlatypus":[28,46,109],"ecosystem":[31,73,110],"for":[32,81],"immunogenomics":[33,119],"analysis,":[35],"with":[36],"focus":[38],"on":[39],"adaptive":[40],"immune":[41,83],"repertoires":[42,84],"single-cell":[44,82],"sequencing.":[45],"is":[47],"an":[48,57],"open-source":[49],"web-based":[50],"platform":[51],"provides":[53],"programming":[54],"tutorials":[55],"integrative":[58],"database":[59],"that":[60],"helps":[61,111],"elucidate":[62],"signatures":[63],"B":[65],"T":[67],"cell":[68],"clonal":[69],"selection.":[70],"Furthermore,":[71],"links":[74],"established":[77],"bioinformatics":[78],"pipelines":[79],"relevant":[80],"other":[86],"aspects":[87],"such":[91],"as":[92],"predicting":[93],"ligand-receptor":[94],"interactions,":[95],"structural":[96],"modeling,":[97],"simulations,":[98],"machine":[99],"learning,":[100],"graph":[101],"theory,":[102],"pseudotime,":[103],"spatial":[104],"transcriptomics,":[105],"phylogenetics.":[107],"extract":[112],"deeper":[113],"insight":[114],"promote":[121],"open":[122],"science.":[123],"AVAILABILITY":[124],"AND":[125],"IMPLEMENTATION:":[126],"Platypus":[127],"code":[128],"used":[129],"this":[131],"manuscript":[132],"can":[133],"be":[134],"found":[135],"at":[136],"github.com/alexyermanos/Platypus.":[137]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":3}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}