{"id":"https://openalex.org/W4386755172","doi":"https://doi.org/10.1093/bioinformatics/btad539","title":"Advancements in computational modelling of biological systems: seventh annual SysMod meeting","display_name":"Advancements in computational modelling of biological systems: seventh annual SysMod meeting","publication_year":2023,"publication_date":"2023-09-01","ids":{"openalex":"https://openalex.org/W4386755172","doi":"https://doi.org/10.1093/bioinformatics/btad539"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad539","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad539/51572153/btad539.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad539/51572153/btad539.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035054695","display_name":"Bhanwar Lal Puniya","orcid":"https://orcid.org/0000-0001-7528-3568"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bhanwar Lal Puniya","raw_affiliation_strings":["Department of Biochemistry, University of Nebraska-Lincoln , Lincoln, NE 68588, United States"],"raw_orcid":"https://orcid.org/0000-0001-7528-3568","affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Nebraska-Lincoln , Lincoln, NE 68588, United States","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065854572","display_name":"Andreas Dr\u00e4ger","orcid":"https://orcid.org/0000-0002-1240-5553"},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Dr\u00e4ger","raw_affiliation_strings":["Cluster of Excellence \u2018Controlling Microbes to Fight Infections\u2019, Eberhard Karl University of T\u00fcbingen , T\u00fcbingen 72076, Germany","Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), Eberhard Karl University of T\u00fcbingen , T\u00fcbingen 72076, Germany","Department of Computer Science, Eberhard Karl University of T\u00fcbingen , T\u00fcbingen 72076, Germany","German Center for Infection Research (DZIF), Partner Site T\u00fcbingen , T\u00fcbingen 72076, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1240-5553","affiliations":[{"raw_affiliation_string":"Cluster of Excellence \u2018Controlling Microbes to Fight Infections\u2019, Eberhard Karl University of T\u00fcbingen , T\u00fcbingen 72076, Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), Eberhard Karl University of T\u00fcbingen , T\u00fcbingen 72076, Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Department of Computer Science, Eberhard Karl University of T\u00fcbingen , T\u00fcbingen 72076, Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"German Center for Infection Research (DZIF), Partner Site T\u00fcbingen , T\u00fcbingen 72076, Germany","institution_ids":["https://openalex.org/I4210115305"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.1427,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58777035,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"39","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.701384961605072},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.6933237314224243},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5964588522911072},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5814709067344666},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.5316636562347412},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5073840022087097},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4397304356098175},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.3538956046104431},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.2572390139102936},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.21770131587982178},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16613724827766418},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12099131941795349},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11657235026359558}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.701384961605072},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.6933237314224243},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5964588522911072},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5814709067344666},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.5316636562347412},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5073840022087097},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4397304356098175},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.3538956046104431},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.2572390139102936},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.21770131587982178},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16613724827766418},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12099131941795349},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11657235026359558},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad539","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad539/51572153/btad539.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10937619","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10937619","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10937619/pdf/btad539.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.unl.edu:biochemfacpub-1620","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/biochemfacpub/622","pdf_url":null,"source":{"id":"https://openalex.org/S4306400577","display_name":"Lincoln (University of Nebraska)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114395901","host_organization_name":"University of Nebraska\u2013Lincoln","host_organization_lineage":["https://openalex.org/I114395901"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Department of Biochemistry: Faculty Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad539","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad539","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/9/btad539/51572153/btad539.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2036822895","display_name":null,"funder_award_id":"EXC 2124","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4771072336","display_name":null,"funder_award_id":"390838134","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7731648302","display_name":null,"funder_award_id":"R35GM119770","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4386755172.pdf"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W3125335542","https://openalex.org/W3135261648","https://openalex.org/W4220851257","https://openalex.org/W4223626367","https://openalex.org/W4225373808","https://openalex.org/W4225706825","https://openalex.org/W4293023608","https://openalex.org/W4316495392","https://openalex.org/W4362657613"],"related_works":["https://openalex.org/W4386563820","https://openalex.org/W631732704","https://openalex.org/W2155261113","https://openalex.org/W2064988479","https://openalex.org/W1748979965","https://openalex.org/W3199870583","https://openalex.org/W4254550161","https://openalex.org/W1497779830","https://openalex.org/W2315680351","https://openalex.org/W207829213"],"abstract_inverted_index":{"Abstract":[0],"Summary":[1],"The":[2,40,66,95],"Computational":[3],"Modelling":[4],"of":[5,10,31,115],"Systems":[6,19],"Biology":[7,22],"(SysMod)":[8],"Community":[9],"Special":[11],"Interest":[12],"(COSI)":[13],"convenes":[14],"annually":[15],"at":[16,129],"the":[17,103,110,116],"Intelligent":[18],"for":[20],"Molecular":[21],"(ISMB)":[23],"conference":[24],"to":[25,71,86],"facilitate":[26],"knowledge":[27],"dissemination":[28],"and":[29,62,77,83,92,113,119,123],"exchange":[30],"research":[32,100],"findings":[33],"on":[34,58],"systems":[35,74,88],"modelling":[36,59,72],"from":[37],"interdisciplinary":[38],"domains.":[39],"SysMod":[41],"meeting":[42,67,96],"2022":[43],"was":[44],"held":[45],"in":[46,50],"a":[47,54],"hybrid":[48],"mode":[49],"Madison,":[51],"Wisconsin,":[52],"spanning":[53],"1-day":[55],"duration":[56],"centred":[57],"techniques,":[60],"applications,":[61],"single-cell":[63,91],"technology":[64],"implementations.":[65],"showcased":[68],"innovative":[69],"approaches":[70],"biological":[73],"using":[75,90],"cell-specific":[76],"multiscale":[78],"modelling,":[79],"multiomics":[80,93],"data":[81],"integration,":[82],"novel":[84],"tools":[85],"develop":[87],"models":[89],"technology.":[94],"also":[97],"recognized":[98],"outstanding":[99],"by":[101],"awarding":[102],"three":[104],"best":[105],"posters.":[106],"This":[107],"report":[108],"summarizes":[109],"key":[111],"highlights":[112],"outcomes":[114],"meeting.":[117],"Availability":[118],"implementation":[120],"All":[121],"resources":[122],"further":[124],"information":[125],"are":[126],"freely":[127],"accessible":[128],"https://sysmod.info.":[130]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}