{"id":"https://openalex.org/W4385898787","doi":"https://doi.org/10.1093/bioinformatics/btad511","title":"Predicted structural proteome of <i>Sphagnum divinum</i> and proteome-scale annotation","display_name":"Predicted structural proteome of <i>Sphagnum divinum</i> and proteome-scale annotation","publication_year":2023,"publication_date":"2023-08-01","ids":{"openalex":"https://openalex.org/W4385898787","doi":"https://doi.org/10.1093/bioinformatics/btad511","pmid":"https://pubmed.ncbi.nlm.nih.gov/37589594"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad511","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad511","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad511/51135287/btad511.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad511/51135287/btad511.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046664249","display_name":"Russell B. Davidson","orcid":"https://orcid.org/0000-0003-2364-4039"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell B Davidson","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States"],"raw_orcid":"https://orcid.org/0000-0003-2364-4039","affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068431797","display_name":"Mark Coletti","orcid":"https://orcid.org/0000-0003-1020-531X"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Coletti","raw_affiliation_strings":["Computer Science and Mathematics Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Mathematics Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000947559","display_name":"Mu Gao","orcid":"https://orcid.org/0000-0002-0378-3704"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mu Gao","raw_affiliation_strings":["Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology , Atlanta, GA 30332, United States"],"raw_orcid":"https://orcid.org/0000-0002-0378-3704","affiliations":[{"raw_affiliation_string":"Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology , Atlanta, GA 30332, United States","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014832921","display_name":"Bryan Piatkowski","orcid":"https://orcid.org/0000-0002-1334-8431"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Piatkowski","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States"],"raw_orcid":"https://orcid.org/0000-0002-1334-8431","affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014539262","display_name":"Avinash Sreedasyam","orcid":"https://orcid.org/0000-0001-7336-7012"},"institutions":[{"id":"https://openalex.org/I4210145894","display_name":"HudsonAlpha Institute for Biotechnology","ror":"https://ror.org/04nz0wq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210145894"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Avinash Sreedasyam","raw_affiliation_strings":["Genome Sequencing Center, HudsonAlpha Institute for Biotechnology , Huntsville, AL 35806, United States"],"raw_orcid":"https://orcid.org/0000-0001-7336-7012","affiliations":[{"raw_affiliation_string":"Genome Sequencing Center, HudsonAlpha Institute for Biotechnology , Huntsville, AL 35806, United States","institution_ids":["https://openalex.org/I4210145894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090421599","display_name":"Farhan Quadir","orcid":"https://orcid.org/0000-0003-0480-5714"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Farhan Quadir","raw_affiliation_strings":["Electrical Engineering and Computer Science, University of Missouri , Columbia, MS 65211, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, University of Missouri , Columbia, MS 65211, United States","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052454206","display_name":"David J. Weston","orcid":"https://orcid.org/0000-0002-4794-9913"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David J Weston","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058494554","display_name":"Jeremy Schmutz","orcid":"https://orcid.org/0000-0001-8062-9172"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I4210145894","display_name":"HudsonAlpha Institute for Biotechnology","ror":"https://ror.org/04nz0wq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210145894"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy Schmutz","raw_affiliation_strings":["Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","Genome Sequencing Center, HudsonAlpha Institute for Biotechnology , Huntsville, AL 35806, United States"],"raw_orcid":"https://orcid.org/0000-0001-8062-9172","affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I148283060","https://openalex.org/I196679689"]},{"raw_affiliation_string":"Genome Sequencing Center, HudsonAlpha Institute for Biotechnology , Huntsville, AL 35806, United States","institution_ids":["https://openalex.org/I4210145894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044354277","display_name":"Jianlin Cheng","orcid":"https://orcid.org/0000-0003-0305-2853"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianlin Cheng","raw_affiliation_strings":["Electrical Engineering and Computer Science, University of Missouri , Columbia, MS 65211, United States"],"raw_orcid":"https://orcid.org/0000-0003-0305-2853","affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, University of Missouri , Columbia, MS 65211, United States","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010808261","display_name":"Jeffrey Skolnick","orcid":"https://orcid.org/0000-0002-1877-4958"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Skolnick","raw_affiliation_strings":["Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology , Atlanta, GA 30332, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology , Atlanta, GA 30332, United States","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037417242","display_name":"Jerry M. Parks","orcid":"https://orcid.org/0000-0002-3103-9333"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jerry M Parks","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States"],"raw_orcid":"https://orcid.org/0000-0002-3103-9333","affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060608335","display_name":"Ada Sedova","orcid":"https://orcid.org/0000-0002-8233-3057"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ada Sedova","raw_affiliation_strings":["Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States"],"raw_orcid":"https://orcid.org/0000-0002-8233-3057","affiliations":[{"raw_affiliation_string":"Biosciences Division, Oak Ridge National Laboratory , Oak Ridge, TN 37830, United States","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5060608335"],"corresponding_institution_ids":["https://openalex.org/I1289243028"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.771,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.72227937,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"39","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12091","display_name":"Peatlands and Wetlands Ecology","score":0.2928999960422516,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12091","display_name":"Peatlands and Wetlands Ecology","score":0.2928999960422516,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11836","display_name":"Bryophyte Studies and Records","score":0.06239999830722809,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11917","display_name":"Coagulation, Bradykinin, Polyphosphates, and Angioedema","score":0.0215000007301569,"subfield":{"id":"https://openalex.org/subfields/2716","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.8976634740829468},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7101754546165466},{"id":"https://openalex.org/keywords/sphagnum","display_name":"Sphagnum","score":0.5939669609069824},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5434229373931885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4543251097202301},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4476475119590759},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26222312450408936},{"id":"https://openalex.org/keywords/peat","display_name":"Peat","score":0.22888636589050293},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.15333351492881775}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.8976634740829468},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7101754546165466},{"id":"https://openalex.org/C2777253967","wikidata":"https://www.wikidata.org/wiki/Q30019","display_name":"Sphagnum","level":3,"score":0.5939669609069824},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5434229373931885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4543251097202301},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4476475119590759},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26222312450408936},{"id":"https://openalex.org/C53657456","wikidata":"https://www.wikidata.org/wiki/Q184624","display_name":"Peat","level":2,"score":0.22888636589050293},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.15333351492881775}],"mesh":[{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D044003","descriptor_name":"Sphagnopsida","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad511","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad511","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad511/51135287/btad511.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37589594","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37589594","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10463551","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10463551","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10463551/pdf/btad511.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:osti.gov:1997742","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1997742","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad511","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad511","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad511/51135287/btad511.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G121915436","display_name":null,"funder_award_id":"DEAC05- 00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1263320119","display_name":null,"funder_award_id":"R35 GM118039","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1337544421","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1761219657","display_name":"HIGH THROUGHPUT, ACCURATE GENE ANNOTATION THROUGH AI AND HPC-ENABLED STRUCTURAL ANALYSIS","funder_award_id":"DESC0021303","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G203625172","display_name":null,"funder_award_id":"DE--AC05--00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G213222014","display_name":null,"funder_award_id":"DEAC02-05CH11231","funder_id":"https://openalex.org/F4320337547","funder_display_name":"Laboratory Directed Research and Development"},{"id":"https://openalex.org/G223002938","display_name":null,"funder_award_id":"DE-AC02 \u2212 05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G2988778103","display_name":null,"funder_award_id":"DE-AC05?","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3121793570","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G419881185","display_name":null,"funder_award_id":"DEAC02\u201305CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G42916606","display_name":null,"funder_award_id":"DE AC02 05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4423657506","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G450780475","display_name":null,"funder_award_id":"DE\u2010AC05\u201300OR22725","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G574648691","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320337547","funder_display_name":"Laboratory Directed Research and Development"},{"id":"https://openalex.org/G660579501","display_name":null,"funder_award_id":"DE-AC0205CH11231","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G675320460","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G7205239661","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G7787287669","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G834277795","display_name":null,"funder_award_id":"DE\u2013AC02\u201305CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320337547","display_name":"Laboratory Directed Research and Development","ror":"https://ror.org/01e41cf67"},{"id":"https://openalex.org/F4320338287","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1576182882","https://openalex.org/W1993251199","https://openalex.org/W2029667189","https://openalex.org/W2099808035","https://openalex.org/W2111973517","https://openalex.org/W2121215519","https://openalex.org/W2130479394","https://openalex.org/W2141292707","https://openalex.org/W2163027365","https://openalex.org/W2617366091","https://openalex.org/W2766166281","https://openalex.org/W2935247823","https://openalex.org/W2972411752","https://openalex.org/W3032379038","https://openalex.org/W3041965444","https://openalex.org/W3177828909","https://openalex.org/W3183475563","https://openalex.org/W3195375135","https://openalex.org/W3201244536","https://openalex.org/W3201292455","https://openalex.org/W3211795435","https://openalex.org/W4291825819","https://openalex.org/W4297329014","https://openalex.org/W4308463927","https://openalex.org/W4309506674","https://openalex.org/W4319310847"],"related_works":["https://openalex.org/W2316833920","https://openalex.org/W4377098514","https://openalex.org/W4387564043","https://openalex.org/W2290118617","https://openalex.org/W1975345997","https://openalex.org/W2019197244","https://openalex.org/W3104590184","https://openalex.org/W2132744522","https://openalex.org/W2048777227","https://openalex.org/W2967223254"],"abstract_inverted_index":{"MOTIVATION:":[0],"Sphagnum-dominated":[1],"peatlands":[2],"store":[3],"a":[4,106],"substantial":[5],"amount":[6],"of":[7,61,83,92,102,109,146],"terrestrial":[8],"carbon.":[9],"The":[10,143],"genus":[11],"is":[12],"undersampled":[13],"and":[14,30,47,56,118,133],"under-studied.":[15],"No":[16],"experimental":[17],"crystal":[18],"structure":[19,70],"from":[20],"any":[21],"Sphagnum":[22,84],"species":[23],"exists":[24],"in":[25,40,137,154],"the":[26,41,59,75,119,147,155],"Protein":[27,43],"Data":[28],"Bank":[29],"fewer":[31],"than":[32],"200":[33],"Sphagnum-related":[34],"genes":[35],"have":[36,151],"structural":[37,63,77,89,144],"models":[38,95,145],"available":[39,136],"AlphaFold":[42],"Structure":[44],"Database.":[45],"Tools":[46],"resources":[48],"are":[49,135],"needed":[50],"to":[51,57,122],"help":[52],"bridge":[53],"these":[54],"gaps,":[55],"enable":[58],"analysis":[60],"other":[62],"proteomes":[64],"now":[65],"made":[66],"possible":[67],"by":[68],"accurate":[69],"prediction.":[71],"RESULTS:":[72],"We":[73],"present":[74],"predicted":[76],"proteome":[78,150],"(25":[79],"134":[80],"primary":[81],"transcripts)":[82],"divinum":[85,149],"computed":[86],"using":[87],"AlphaFold,":[88],"alignment":[90],"results":[91],"all":[93],"high-confidence":[94],"against":[96],"an":[97],"annotated":[98],"nonredundant":[99],"crystallographic":[100],"database":[101],"over":[103],"90,000":[104],"structures,":[105],"structure-based":[107,126],"classification":[108],"putative":[110],"Enzyme":[111],"Commission":[112],"(EC)":[113],"numbers":[114],"across":[115],"this":[116,124],"proteome,":[117],"computational":[120],"method":[121],"perform":[123],"proteome-scale":[125],"annotation.":[127],"AVAILABILITY":[128],"AND":[129],"IMPLEMENTATION:":[130],"All":[131],"data":[132],"code":[134],"public":[138],"repositories,":[139],"detailed":[140],"at":[141,158],"https://github.com/BSDExabio/SAFA.":[142],"S.":[148],"been":[152],"deposited":[153],"ModelArchive":[156],"repository":[157],"https://modelarchive.org/doi/10.5452/ma-ornl-sphdiv.":[159]},"counts_by_year":[{"year":2024,"cited_by_count":4}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2023-08-18T00:00:00"}
