{"id":"https://openalex.org/W4385564024","doi":"https://doi.org/10.1093/bioinformatics/btad490","title":"Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources","display_name":"Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources","publication_year":2023,"publication_date":"2023-08-01","ids":{"openalex":"https://openalex.org/W4385564024","doi":"https://doi.org/10.1093/bioinformatics/btad490","pmid":"https://pubmed.ncbi.nlm.nih.gov/37540207"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad490","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad490","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad490/51038851/btad490.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad490/51038851/btad490.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039988707","display_name":"Evangelos Karatzas","orcid":"https://orcid.org/0000-0001-9132-8981"},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Evangelos Karatzas","raw_affiliation_strings":["Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , Vari (Athens), 16672, Greece"],"raw_orcid":"https://orcid.org/0000-0001-9132-8981","affiliations":[{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , Vari (Athens), 16672, Greece","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038035082","display_name":"Fotis A. Baltoumas","orcid":"https://orcid.org/0000-0002-2870-2931"},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Fotis A Baltoumas","raw_affiliation_strings":["Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , Vari (Athens), 16672, Greece"],"raw_orcid":"https://orcid.org/0000-0002-2870-2931","affiliations":[{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , Vari (Athens), 16672, Greece","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033236033","display_name":"Eleni Aplakidou","orcid":"https://orcid.org/0009-0002-0737-4817"},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Eleni Aplakidou","raw_affiliation_strings":["Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , Vari (Athens), 16672, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , Vari (Athens), 16672, Greece","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089349897","display_name":"Panagiota I. Kontou","orcid":"https://orcid.org/0000-0003-3321-7911"},"institutions":[{"id":"https://openalex.org/I145722265","display_name":"University of Thessaly","ror":"https://ror.org/04v4g9h31","country_code":"GR","type":"education","lineage":["https://openalex.org/I145722265"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Panagiota I Kontou","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Thessaly , Lamia, 35131, Greece","Department of Mathematics, University of Thessaly , Lamia, 35100, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Thessaly , Lamia, 35131, Greece","institution_ids":["https://openalex.org/I145722265"]},{"raw_affiliation_string":"Department of Mathematics, University of Thessaly , Lamia, 35100, Greece","institution_ids":["https://openalex.org/I145722265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069816755","display_name":"Panos Stathopoulos","orcid":"https://orcid.org/0000-0002-6661-721X"},"institutions":[{"id":"https://openalex.org/I200777214","display_name":"National and Kapodistrian University of Athens","ror":"https://ror.org/04gnjpq42","country_code":"GR","type":"education","lineage":["https://openalex.org/I200777214"]},{"id":"https://openalex.org/I4210141397","display_name":"Eginition Hospital","ror":"https://ror.org/03wed5r38","country_code":"GR","type":"healthcare","lineage":["https://openalex.org/I4210141397"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Panos Stathopoulos","raw_affiliation_strings":["1st Department of Neurology, Eginition Hospital , Athens, 11528, Greece","School of Medicine, National and Kapodistrian University of Athens , Athens, 11527, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1st Department of Neurology, Eginition Hospital , Athens, 11528, Greece","institution_ids":["https://openalex.org/I4210141397"]},{"raw_affiliation_string":"School of Medicine, National and Kapodistrian University of Athens , Athens, 11527, Greece","institution_ids":["https://openalex.org/I200777214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089947731","display_name":"Leonidas Stefanis","orcid":"https://orcid.org/0000-0003-3569-8990"},"institutions":[{"id":"https://openalex.org/I4210141397","display_name":"Eginition Hospital","ror":"https://ror.org/03wed5r38","country_code":"GR","type":"healthcare","lineage":["https://openalex.org/I4210141397"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Leonidas Stefanis","raw_affiliation_strings":["1st Department of Neurology, Eginition Hospital , Athens, 11528, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1st Department of Neurology, Eginition Hospital , Athens, 11528, Greece","institution_ids":["https://openalex.org/I4210141397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035334094","display_name":"Pantelis G. Bagos","orcid":"https://orcid.org/0000-0003-4935-2325"},"institutions":[{"id":"https://openalex.org/I145722265","display_name":"University of Thessaly","ror":"https://ror.org/04v4g9h31","country_code":"GR","type":"education","lineage":["https://openalex.org/I145722265"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Pantelis G Bagos","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Thessaly , Lamia, 35131, Greece"],"raw_orcid":"https://orcid.org/0000-0003-4935-2325","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Thessaly , Lamia, 35131, Greece","institution_ids":["https://openalex.org/I145722265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088991393","display_name":"Georgios A. Pavlopoulos","orcid":"https://orcid.org/0000-0002-4577-8276"},"institutions":[{"id":"https://openalex.org/I24897511","display_name":"Hellenic Military Academy","ror":"https://ror.org/01esc8r67","country_code":"GR","type":"education","lineage":["https://openalex.org/I24897511"]},{"id":"https://openalex.org/I4210093138","display_name":"Biomedical Research Foundation of the Academy of Athens","ror":"https://ror.org/00gban551","country_code":"GR","type":"nonprofit","lineage":["https://openalex.org/I4210093138"]},{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Georgios A Pavlopoulos","raw_affiliation_strings":["Center of Basic Research, Biomedical Research Foundation of the Academy of Athens , Athens, 11527, Greece","Hellenic Army Academy , Vari, 16673, Greece","Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , Vari (Athens), 16672, Greece"],"raw_orcid":"https://orcid.org/0000-0002-4577-8276","affiliations":[{"raw_affiliation_string":"Center of Basic Research, Biomedical Research Foundation of the Academy of Athens , Athens, 11527, Greece","institution_ids":["https://openalex.org/I4210093138"]},{"raw_affiliation_string":"Hellenic Army Academy , Vari, 16673, Greece","institution_ids":["https://openalex.org/I24897511"]},{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d , Vari (Athens), 16672, Greece","institution_ids":["https://openalex.org/I6820528"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5039988707"],"corresponding_institution_ids":["https://openalex.org/I6820528"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.4713,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.89330704,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"39","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.46619999408721924,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.46619999408721924,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.459199994802475,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.018200000748038292,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.6383014917373657},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5867871642112732},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42441433668136597},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23056241869926453}],"concepts":[{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.6383014917373657},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5867871642112732},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42441433668136597},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23056241869926453}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad490","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad490","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad490/51038851/btad490.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37540207","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37540207","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt3df580s5","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3df580s5","pdf_url":"https://escholarship.org/content/qt3df580s5/qt3df580s5.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 39, iss 8","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10423032","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10423032","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10423032/pdf/btad490.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad490","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad490","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad490/51038851/btad490.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1337233005","display_name":null,"funder_award_id":"NSRF 2014-2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3019969596","display_name":null,"funder_award_id":"5002780","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5634946813","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6812757319","display_name":null,"funder_award_id":"MIS 5002802","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6870533126","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7538097724","display_name":null,"funder_award_id":"NSRF 2014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G8707089225","display_name":null,"funder_award_id":"1855-BOLOGNA","funder_id":"https://openalex.org/F4320327859","funder_display_name":"Hellenic Foundation for Research and Innovation"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323220","display_name":"Alexander S. Onassis Public Benefit Foundation","ror":"https://ror.org/017nq0d63"},{"id":"https://openalex.org/F4320327859","display_name":"Hellenic Foundation for Research and Innovation","ror":null},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385564024.pdf"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W1972898190","https://openalex.org/W1989277387","https://openalex.org/W2000860171","https://openalex.org/W2010457001","https://openalex.org/W2035618305","https://openalex.org/W2038963685","https://openalex.org/W2053039860","https://openalex.org/W2091473053","https://openalex.org/W2098758691","https://openalex.org/W2120141270","https://openalex.org/W2122732537","https://openalex.org/W2124649657","https://openalex.org/W2128386749","https://openalex.org/W2133465414","https://openalex.org/W2136410628","https://openalex.org/W2140099276","https://openalex.org/W2145748421","https://openalex.org/W2148043260","https://openalex.org/W2159482845","https://openalex.org/W2162151166","https://openalex.org/W2166898290","https://openalex.org/W2169589032","https://openalex.org/W2171030481","https://openalex.org/W2174734928","https://openalex.org/W2224056471","https://openalex.org/W2260297624","https://openalex.org/W2275721306","https://openalex.org/W2611604995","https://openalex.org/W2611696724","https://openalex.org/W2767891136","https://openalex.org/W2767914218","https://openalex.org/W2804476515","https://openalex.org/W2899915536","https://openalex.org/W2900090807","https://openalex.org/W2928665623","https://openalex.org/W2944226869","https://openalex.org/W2970534831","https://openalex.org/W2983166786","https://openalex.org/W3003422837","https://openalex.org/W3011530418","https://openalex.org/W3020992812","https://openalex.org/W3039150496","https://openalex.org/W3094967361","https://openalex.org/W3109735703","https://openalex.org/W3110917833","https://openalex.org/W3112376646","https://openalex.org/W3145969289","https://openalex.org/W3154755494","https://openalex.org/W3164271582","https://openalex.org/W3170957331","https://openalex.org/W3178564164","https://openalex.org/W3184729641","https://openalex.org/W3194795934","https://openalex.org/W3206307177","https://openalex.org/W3208185324","https://openalex.org/W4200135473","https://openalex.org/W4200553915","https://openalex.org/W4210366024","https://openalex.org/W4210445422","https://openalex.org/W4210914372","https://openalex.org/W4220684489","https://openalex.org/W4220831425","https://openalex.org/W4233698560","https://openalex.org/W4239734004","https://openalex.org/W4243979784","https://openalex.org/W4249478384","https://openalex.org/W4255156463","https://openalex.org/W4294216483","https://openalex.org/W4307552292","https://openalex.org/W4308834893","https://openalex.org/W4311275500","https://openalex.org/W4323036511","https://openalex.org/W4367598492","https://openalex.org/W4376131110","https://openalex.org/W4378713584","https://openalex.org/W6796560771","https://openalex.org/W6836575638"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4313320911","https://openalex.org/W4327743144","https://openalex.org/W4245077728","https://openalex.org/W2390279801","https://openalex.org/W2607424049","https://openalex.org/W4390922876","https://openalex.org/W3183204001"],"abstract_inverted_index":{"Functional":[0],"enrichment":[1,43,175],"is":[2],"the":[3,57,164],"process":[4],"of":[5,15,149,167],"identifying":[6],"implicated":[7],"functional":[8,42],"terms":[9],"from":[10,39,122,157],"a":[11,26,31,74,158],"given":[12],"input":[13,50],"list":[14],"genes":[16,119],"or":[17,70,144],"proteins.":[18],"In":[19,52],"this":[20,53],"article,":[21],"we":[22],"present":[23],"Flame":[24,55,171],"(v2.0),":[25],"web":[27],"tool":[28],"which":[29],"offers":[30],"combinatorial":[32],"approach":[33],"through":[34,112,125],"merging":[35],"and":[36,62,65,81,94,105,108,120,127,139],"visualizing":[37],"results":[38],"widely":[40],"used":[41],"applications":[44],"while":[45],"also":[46],"allowing":[47],"various":[48],"flexible":[49],"options.":[51],"version,":[54],"utilizes":[56],"aGOtool,":[58],"g:":[59],"Profiler,":[60],"WebGestalt,":[61],"Enrichr":[63],"pipelines":[64],"presents":[66],"their":[67,141],"outputs":[68],"separately":[69],"in":[71],"combination":[72],"following":[73],"visual":[75],"analytics":[76],"approach.":[77],"For":[78],"intuitive":[79],"representations":[80],"easier":[82],"interpretation,":[83],"it":[84],"uses":[85],"interactive":[86,113],"plots":[87],"such":[88],"as":[89],"parameterizable":[90,159],"networks,":[91],"heatmaps,":[92],"barcharts,":[93],"scatter":[95],"plots.":[96],"Users":[97],"can":[98],"also:":[99],"(i)":[100],"handle":[101],"multiple":[102,147],"protein/gene":[103],"lists":[104,148],"analyse":[106,146],"union":[107],"intersection":[109],"sets":[110],"simultaneously":[111],"UpSet":[114],"plots,":[115],"(ii)":[116],"automatically":[117],"extract":[118,140],"proteins":[121],"free":[123],"text":[124],"text-mining":[126],"Named":[128],"Entity":[129],"Recognition":[130],"(NER)":[131],"techniques,":[132],"(iii)":[133],"upload":[134],"single":[135],"nucleotide":[136],"polymorphisms":[137],"(SNPs)":[138],"relative":[142],"genes,":[143],"(iv)":[145],"differentially":[150],"expressed":[151],"proteins/genes":[152],"after":[153],"selecting":[154],"them":[155],"interactively":[156],"volcano":[160],"plot.":[161],"Compared":[162],"to":[163],"previous":[165],"version":[166],"197":[168],"supported":[169],"organisms,":[170],"(v2.0)":[172],"currently":[173],"allows":[174],"for":[176],"14":[177],"436":[178],"organisms.":[179],"AVAILABILITY":[180],"AND":[181],"IMPLEMENTATION:":[182],"Web":[183],"Application:":[184],"http://flame.pavlopouloslab.info.":[185],"Code:":[186],"https://github.com/PavlopoulosLab/Flame.":[187],"Docker:":[188],"https://hub.docker.com/r/pavlopouloslab/flame.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":8}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
