{"id":"https://openalex.org/W4385446810","doi":"https://doi.org/10.1093/bioinformatics/btad480","title":"Short-read aligner performance in germline variant identification","display_name":"Short-read aligner performance in germline variant identification","publication_year":2023,"publication_date":"2023-08-01","ids":{"openalex":"https://openalex.org/W4385446810","doi":"https://doi.org/10.1093/bioinformatics/btad480","pmid":"https://pubmed.ncbi.nlm.nih.gov/37527006"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad480","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad480/51016588/btad480.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad480/51016588/btad480.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055200839","display_name":"Richard Wilton","orcid":"https://orcid.org/0000-0003-1263-5532"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Richard Wilton","raw_affiliation_strings":["Department of Physics and Astronomy, Johns Hopkins University , Baltimore, MD 21218, United States"],"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, Johns Hopkins University , Baltimore, MD 21218, United States","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019891335","display_name":"Alexander S. Szalay","orcid":"https://orcid.org/0000-0002-4108-3282"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander S Szalay","raw_affiliation_strings":["Department of Computer Science, Johns Hopkins University , Baltimore, MD 21218, United States","Department of Physics and Astronomy, Johns Hopkins University , Baltimore, MD 21218, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Johns Hopkins University , Baltimore, MD 21218, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Physics and Astronomy, Johns Hopkins University , Baltimore, MD 21218, United States","institution_ids":["https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5055200839"],"corresponding_institution_ids":["https://openalex.org/I145311948"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7782,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.73114394,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":97},"biblio":{"volume":"39","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.830492377281189},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6127707362174988},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6031155586242676},{"id":"https://openalex.org/keywords/germline","display_name":"Germline","score":0.582062840461731},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.425445556640625},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3545186221599579},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14851632714271545},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13826096057891846},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09735733270645142}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.830492377281189},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6127707362174988},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6031155586242676},{"id":"https://openalex.org/C109825262","wikidata":"https://www.wikidata.org/wiki/Q1139164","display_name":"Germline","level":3,"score":0.582062840461731},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.425445556640625},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3545186221599579},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14851632714271545},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13826096057891846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09735733270645142},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad480","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad480/51016588/btad480.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37527006","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37527006","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10421969","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10421969","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10421969/pdf/btad480.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad480","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad480/51016588/btad480.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310145","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385446810.pdf"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1500214331","https://openalex.org/W1596062789","https://openalex.org/W1846919320","https://openalex.org/W1971584645","https://openalex.org/W2039808236","https://openalex.org/W2045040686","https://openalex.org/W2055043387","https://openalex.org/W2070102345","https://openalex.org/W2076359272","https://openalex.org/W2085755265","https://openalex.org/W2087064593","https://openalex.org/W2093458624","https://openalex.org/W2109293112","https://openalex.org/W2112113834","https://openalex.org/W2127230663","https://openalex.org/W2138603354","https://openalex.org/W2160782760","https://openalex.org/W2170551349","https://openalex.org/W2189510244","https://openalex.org/W2522993044","https://openalex.org/W2567485024","https://openalex.org/W2770095154","https://openalex.org/W2884983162","https://openalex.org/W2888193242","https://openalex.org/W2889664156","https://openalex.org/W2899025479","https://openalex.org/W2914547442","https://openalex.org/W2920592943","https://openalex.org/W2929354011","https://openalex.org/W2947780575","https://openalex.org/W2950257784","https://openalex.org/W2953263404","https://openalex.org/W2953517386","https://openalex.org/W2964106101","https://openalex.org/W2971559821","https://openalex.org/W3013142018","https://openalex.org/W3014638255","https://openalex.org/W3101579057","https://openalex.org/W3110675778","https://openalex.org/W3131055609","https://openalex.org/W3158170126","https://openalex.org/W3166319232","https://openalex.org/W4200597270","https://openalex.org/W4210483144","https://openalex.org/W4220999759","https://openalex.org/W4225399233","https://openalex.org/W4225764874","https://openalex.org/W4226151130","https://openalex.org/W4281856005","https://openalex.org/W4283210431","https://openalex.org/W4311822265","https://openalex.org/W4365513261","https://openalex.org/W4376133202","https://openalex.org/W6764885223"],"related_works":["https://openalex.org/W1481440753","https://openalex.org/W2090450622","https://openalex.org/W1990022233","https://openalex.org/W4386741245","https://openalex.org/W3171514391","https://openalex.org/W4293864595","https://openalex.org/W4249302688","https://openalex.org/W2995512452","https://openalex.org/W3014642899","https://openalex.org/W4302275737"],"abstract_inverted_index":{"The":[0],"quick":[1],"brown":[2],"fox":[3],"jumps":[4],"over":[5],"the":[6],"lazy":[7],"dog.":[8]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
