{"id":"https://openalex.org/W4385446873","doi":"https://doi.org/10.1093/bioinformatics/btad475","title":"MIX-TPI: a flexible prediction framework for TCR\u2013pMHC interactions based on multimodal representations","display_name":"MIX-TPI: a flexible prediction framework for TCR\u2013pMHC interactions based on multimodal representations","publication_year":2023,"publication_date":"2023-08-01","ids":{"openalex":"https://openalex.org/W4385446873","doi":"https://doi.org/10.1093/bioinformatics/btad475","pmid":"https://pubmed.ncbi.nlm.nih.gov/37527015"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad475","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad475/51016574/btad475.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad475/51016574/btad475.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108361021","display_name":"Minghao Yang","orcid":"https://orcid.org/0000-0001-5397-3576"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minghao Yang","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083469101","display_name":"Zhi-An Huang","orcid":"https://orcid.org/0000-0001-9974-148X"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]},{"id":"https://openalex.org/I2799850029","display_name":"Dongguan University of Technology","ror":"https://ror.org/01m8p7q42","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799850029"]},{"id":"https://openalex.org/I4210124427","display_name":"City College of Dongguan University of Technology","ror":"https://ror.org/02vdh2x09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799850029","https://openalex.org/I4210124427"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Zhi-An Huang","raw_affiliation_strings":["Research Office, City University of Hong Kong (Dongguan) , Dongguan 523000, China","Research Office, City University of Hong Kong (Dongguan), Dongguan, 523000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Office, City University of Hong Kong (Dongguan) , Dongguan 523000, China","institution_ids":["https://openalex.org/I4210124427","https://openalex.org/I168719708","https://openalex.org/I2799850029"]},{"raw_affiliation_string":"Research Office, City University of Hong Kong (Dongguan), Dongguan, 523000, China","institution_ids":["https://openalex.org/I4210124427","https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060028018","display_name":"Wei Zhou","orcid":"https://orcid.org/0000-0001-9384-8710"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Zhou","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046906366","display_name":"Junkai Ji","orcid":"https://orcid.org/0000-0002-1985-938X"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junkai Ji","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100400217","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0001-7835-9871"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011186506","display_name":"Shan He","orcid":"https://orcid.org/0000-0003-1694-1465"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Shan He","raw_affiliation_strings":["School of Computer Science, University of Birmingham , Birmingham B15 2TT, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-1694-1465","affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Birmingham , Birmingham B15 2TT, United Kingdom","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052762681","display_name":"Zexuan Zhu","orcid":"https://orcid.org/0000-0001-8479-6904"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zexuan Zhu","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060, China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China"],"raw_orcid":"https://orcid.org/0000-0001-8479-6904","affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China","institution_ids":["https://openalex.org/I180726961"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5052762681"],"corresponding_institution_ids":["https://openalex.org/I180726961"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.786,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.85331321,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"39","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9404000043869019,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9404000043869019,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.014100000262260437,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.01140000019222498,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7325759530067444},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44961825013160706},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4102488160133362},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3659652769565582},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3315710723400116},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16205939650535583}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7325759530067444},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44961825013160706},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4102488160133362},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3659652769565582},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3315710723400116},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16205939650535583}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btad475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad475","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad475/51016574/btad475.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37527015","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37527015","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/f0c5aeb4-0616-41d6-a7ae-8b21e98687ad","is_oa":true,"landing_page_url":"https://hdl.handle.net/2031/f0c5aeb4-0616-41d6-a7ae-8b21e98687ad","pdf_url":"https://scholars.cityu.edu.hk/files/167021573/166097310.pdf","source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Yang, M, Huang, Z-A, Zhou, W, Ji, J, Zhang, J, He, S & Zhu, Z 2023, 'MIX-TPI : a flexible prediction framework for TCR-pMHC interactions based on multimodal representations', Bioinformatics, vol. 39, no. 8, btad475. https://doi.org/10.1093/bioinformatics/btad475","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10423027","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10423027","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10423027/pdf/btad475.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/1516d8e1-0f2d-4db0-ac0e-cd6e879aabf7","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/1516d8e1-0f2d-4db0-ac0e-cd6e879aabf7","pdf_url":"https://pure-oai.bham.ac.uk/ws/files/260573845/YangM2023MIX-TPI.pdf","source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Yang, M, Huang, Z A, Zhou, W, Ji, J, Zhang, J, He, S & Zhu, Z 2023, 'MIX-TPI : a flexible prediction framework for TCR\u2013pMHC interactions based on multimodal representations', Bioinformatics, vol. 39, no. 8, btad475. https://doi.org/10.1093/bioinformatics/btad475","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad475","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad475/51016574/btad475.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2840727465","display_name":"\u57fa\u4e8e\u81ea\u7ec4\u88c5\u53c2\u8003\u57fa\u56e0\u7ec4\u7684\u9ad8\u901a\u91cf\u957f\u8bfb\u6d4b\u5e8f\u6570\u636e\u538b\u7f29\u548c\u6bd4\u5bf9\u96c6\u6210\u7814\u7a76","funder_award_id":"61871272","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3852789963","display_name":null,"funder_award_id":"62202399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5433012282","display_name":null,"funder_award_id":"2022YFF1202104","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7873125513","display_name":null,"funder_award_id":"62106151","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385446873.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W2064675550","https://openalex.org/W2067069532","https://openalex.org/W2112796928","https://openalex.org/W2114850508","https://openalex.org/W2120518061","https://openalex.org/W2143210482","https://openalex.org/W2145831493","https://openalex.org/W2187089797","https://openalex.org/W2409761064","https://openalex.org/W2613978126","https://openalex.org/W2898389621","https://openalex.org/W2899327929","https://openalex.org/W2909634875","https://openalex.org/W2946165673","https://openalex.org/W2968803773","https://openalex.org/W2968849363","https://openalex.org/W2979330275","https://openalex.org/W2981242070","https://openalex.org/W3080758869","https://openalex.org/W3113525558","https://openalex.org/W3160420762","https://openalex.org/W3196626346","https://openalex.org/W4302424723","https://openalex.org/W4309593122","https://openalex.org/W4317853066","https://openalex.org/W4319455163","https://openalex.org/W4323974789","https://openalex.org/W6667461332"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W1869907491"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,146],"interactions":[2,22,58],"between":[3,99],"T-cell":[4],"receptors":[5],"(TCR)":[6],"and":[7,37,63,74,90,97,138,151],"peptide-major":[8],"histocompatibility":[9],"complex":[10],"(pMHC)":[11],"are":[12,155],"essential":[13],"for":[14],"the":[15,28,79,95,111,117,152],"adaptive":[16],"immune":[17],"system.":[18],"However,":[19],"identifying":[20],"these":[21],"can":[23],"be":[24],"challenging":[25],"due":[26],"to":[27,55,77,93,109],"limited":[29],"availability":[30],"of":[31,81,119,149],"experimental":[32,39],"data,":[33],"sequence":[34],"data":[35,154],"heterogeneity,":[36],"high":[38],"validation":[40],"costs.":[41],"RESULTS:":[42],"To":[43],"address":[44],"this":[45],"issue,":[46],"we":[47],"develop":[48],"a":[49,139],"novel":[50],"computational":[51],"framework,":[52],"named":[53],"MIX-TPI,":[54],"predict":[56],"TCR-pMHC":[57,82],"using":[59],"amino":[60],"acid":[61],"sequences":[62],"physicochemical":[64],"properties.":[65],"Based":[66],"on":[67,133],"convolutional":[68],"neural":[69],"networks,":[70],"MIX-TPI":[71,120,127,150],"incorporates":[72],"sequence-based":[73],"physicochemical-based":[75],"extractors":[76],"refine":[78],"representations":[80,92],"interactions.":[83],"Each":[84],"modality":[85],"is":[86,106],"projected":[87],"into":[88],"modality-invariant":[89],"modality-specific":[91],"capture":[94],"uniformity":[96],"diversities":[98],"different":[100],"features.":[101],"A":[102],"self-attention":[103],"fusion":[104],"layer":[105],"then":[107],"adopted":[108],"form":[110],"classification":[112],"module.":[113],"Experimental":[114],"results":[115],"demonstrate":[116],"effectiveness":[118],"in":[121],"comparison":[122],"with":[123],"other":[124],"state-of-the-art":[125],"methods.":[126],"also":[128],"shows":[129],"good":[130],"generalization":[131],"capability":[132],"mutual":[134],"exclusive":[135],"evaluation":[136],"datasets":[137],"paired":[140],"TCR":[141],"dataset.":[142],"AVAILABILITY":[143],"AND":[144],"IMPLEMENTATION:":[145],"source":[147],"code":[148],"test":[153],"available":[156],"at:":[157],"https://github.com/Wolverinerine/MIX-TPI.":[158]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-18T07:39:51.176621","created_date":"2025-10-10T00:00:00"}
