{"id":"https://openalex.org/W4385237450","doi":"https://doi.org/10.1093/bioinformatics/btad457","title":"LegNet: a best-in-class deep learning model for short DNA regulatory regions","display_name":"LegNet: a best-in-class deep learning model for short DNA regulatory regions","publication_year":2023,"publication_date":"2023-07-25","ids":{"openalex":"https://openalex.org/W4385237450","doi":"https://doi.org/10.1093/bioinformatics/btad457","pmid":"https://pubmed.ncbi.nlm.nih.gov/37490428"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad457","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad457","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad457/50959387/btad457.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad457/50959387/btad457.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045934950","display_name":"Dmitry Penzar","orcid":"https://orcid.org/0000-0001-7960-9385"},"institutions":[{"id":"https://openalex.org/I337778094","display_name":"Pirogov Russian National Research Medical University","ror":"https://ror.org/018159086","country_code":"RU","type":"education","lineage":["https://openalex.org/I337778094","https://openalex.org/I4210117042"]},{"id":"https://openalex.org/I4210137602","display_name":"Institute of Protein Research","ror":"https://ror.org/0489f0s93","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210137602"]},{"id":"https://openalex.org/I4210148309","display_name":"Vavilov Institute of General Genetics","ror":"https://ror.org/05ermrg42","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210148309"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Dmitry Penzar","raw_affiliation_strings":["Institute of Protein Research , Pushchino 142290, Russia","Institute of Translational Medicine, Pirogov Russian National Research Medical University , Moscow 117997, Russia","Vavilov Institute of General Genetics , Moscow 119991, Russia","Vavilov Institute of General Genetics, 119991, Moscow, Russia","Institute of Protein Research, 142290, Pushchino, Russia","Institute of Translational Medicine, Pirogov Russian National Research Medical University, 117997, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Institute of Protein Research , Pushchino 142290, Russia","institution_ids":["https://openalex.org/I4210137602"]},{"raw_affiliation_string":"Institute of Translational Medicine, Pirogov Russian National Research Medical University , Moscow 117997, Russia","institution_ids":["https://openalex.org/I337778094"]},{"raw_affiliation_string":"Vavilov Institute of General Genetics , Moscow 119991, Russia","institution_ids":["https://openalex.org/I4210148309"]},{"raw_affiliation_string":"Vavilov Institute of General Genetics, 119991, Moscow, Russia","institution_ids":["https://openalex.org/I4210148309"]},{"raw_affiliation_string":"Institute of Protein Research, 142290, Pushchino, Russia","institution_ids":["https://openalex.org/I4210137602"]},{"raw_affiliation_string":"Institute of Translational Medicine, Pirogov Russian National Research Medical University, 117997, Moscow, Russia","institution_ids":["https://openalex.org/I337778094"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007283263","display_name":"Daria Nogina","orcid":"https://orcid.org/0000-0002-0593-2726"},"institutions":[{"id":"https://openalex.org/I4210150146","display_name":"Moscow State University","ror":"https://ror.org/050a13t43","country_code":"TJ","type":"education","lineage":["https://openalex.org/I4210150146"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU","TJ"],"is_corresponding":false,"raw_author_name":"Daria Nogina","raw_affiliation_strings":["Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University , Moscow 119991, Russia","Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University , Moscow 119991, Russia","institution_ids":["https://openalex.org/I4210150146"]},{"raw_affiliation_string":"Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006343246","display_name":"Elizaveta Noskova","orcid":"https://orcid.org/0000-0003-2835-3708"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I4210150146","display_name":"Moscow State University","ror":"https://ror.org/050a13t43","country_code":"TJ","type":"education","lineage":["https://openalex.org/I4210150146"]}],"countries":["RU","TJ"],"is_corresponding":false,"raw_author_name":"Elizaveta Noskova","raw_affiliation_strings":["Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University , Moscow 119991, Russia","Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University , Moscow 119991, Russia","institution_ids":["https://openalex.org/I4210150146"]},{"raw_affiliation_string":"Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074873727","display_name":"Arsenii Zinkevich","orcid":"https://orcid.org/0000-0001-9450-4629"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I4210150146","display_name":"Moscow State University","ror":"https://ror.org/050a13t43","country_code":"TJ","type":"education","lineage":["https://openalex.org/I4210150146"]},{"id":"https://openalex.org/I4210148309","display_name":"Vavilov Institute of General Genetics","ror":"https://ror.org/05ermrg42","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210148309"]}],"countries":["RU","TJ"],"is_corresponding":false,"raw_author_name":"Arsenii Zinkevich","raw_affiliation_strings":["Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University , Moscow 119991, Russia","Vavilov Institute of General Genetics , Moscow 119991, Russia","Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991, Moscow, Russia","Vavilov Institute of General Genetics, 119991, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University , Moscow 119991, Russia","institution_ids":["https://openalex.org/I4210150146"]},{"raw_affiliation_string":"Vavilov Institute of General Genetics , Moscow 119991, Russia","institution_ids":["https://openalex.org/I4210148309"]},{"raw_affiliation_string":"Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991, Moscow, Russia","institution_ids":["https://openalex.org/I19880235"]},{"raw_affiliation_string":"Vavilov Institute of General Genetics, 119991, Moscow, Russia","institution_ids":["https://openalex.org/I4210148309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015017270","display_name":"G. A. Meshcheryakov","orcid":"https://orcid.org/0000-0003-0751-8286"},"institutions":[{"id":"https://openalex.org/I4210137602","display_name":"Institute of Protein Research","ror":"https://ror.org/0489f0s93","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210137602"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Georgy Meshcheryakov","raw_affiliation_strings":["Institute of Protein Research , Pushchino 142290, Russia","Institute of Protein Research, 142290, Pushchino, Russia"],"affiliations":[{"raw_affiliation_string":"Institute of Protein Research , Pushchino 142290, Russia","institution_ids":["https://openalex.org/I4210137602"]},{"raw_affiliation_string":"Institute of Protein Research, 142290, Pushchino, Russia","institution_ids":["https://openalex.org/I4210137602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080507942","display_name":"Andrey Lando","orcid":null},"institutions":[{"id":"https://openalex.org/I58957048","display_name":"Yandex (Russia)","ror":"https://ror.org/04dbch786","country_code":"RU","type":"company","lineage":["https://openalex.org/I58957048"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Andrey Lando","raw_affiliation_strings":["Yandex N.V. , Moscow 119021, Russia","Yandex N. V., 119021, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"Yandex N.V. , Moscow 119021, Russia","institution_ids":["https://openalex.org/I58957048"]},{"raw_affiliation_string":"Yandex N. V., 119021, Moscow, Russia","institution_ids":["https://openalex.org/I58957048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000538706","display_name":"Abdul Muntakim Rafi","orcid":"https://orcid.org/0000-0002-0387-5430"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Abdul Muntakim Rafi","raw_affiliation_strings":["School of Biomedical Engineering, University of British Columbia , Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, University of British Columbia , Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029456558","display_name":"Carl G. de Boer","orcid":"https://orcid.org/0000-0001-8935-5921"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Carl de Boer","raw_affiliation_strings":["School of Biomedical Engineering, University of British Columbia , Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, University of British Columbia , Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062435496","display_name":"Ivan V. Kulakovskiy","orcid":"https://orcid.org/0000-0002-6554-8128"},"institutions":[{"id":"https://openalex.org/I21203515","display_name":"Kazan Federal University","ror":"https://ror.org/05256ym39","country_code":"RU","type":"education","lineage":["https://openalex.org/I21203515"]},{"id":"https://openalex.org/I4210148309","display_name":"Vavilov Institute of General Genetics","ror":"https://ror.org/05ermrg42","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210148309"]},{"id":"https://openalex.org/I4210137602","display_name":"Institute of Protein Research","ror":"https://ror.org/0489f0s93","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210137602"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ivan V Kulakovskiy","raw_affiliation_strings":["Institute of Protein Research , Pushchino 142290, Russia","Laboratory of Regulatory Genomics, Institute of Fundamental Medicine and Biology, Kazan Federal University , Kazan 420008, Russia","Vavilov Institute of General Genetics , Moscow 119991, Russia","Vavilov Institute of General Genetics, 119991, Moscow, Russia","Institute of Protein Research, 142290, Pushchino, Russia"],"affiliations":[{"raw_affiliation_string":"Institute of Protein Research , Pushchino 142290, Russia","institution_ids":["https://openalex.org/I4210137602"]},{"raw_affiliation_string":"Laboratory of Regulatory Genomics, Institute of Fundamental Medicine and Biology, Kazan Federal University , Kazan 420008, Russia","institution_ids":["https://openalex.org/I21203515"]},{"raw_affiliation_string":"Vavilov Institute of General Genetics , Moscow 119991, Russia","institution_ids":["https://openalex.org/I4210148309"]},{"raw_affiliation_string":"Vavilov Institute of General Genetics, 119991, Moscow, Russia","institution_ids":["https://openalex.org/I4210148309"]},{"raw_affiliation_string":"Institute of Protein Research, 142290, Pushchino, Russia","institution_ids":["https://openalex.org/I4210137602"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5045934950"],"corresponding_institution_ids":["https://openalex.org/I337778094","https://openalex.org/I4210137602","https://openalex.org/I4210148309"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.378,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.97215264,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"39","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7214056253433228},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4980456829071045},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.48646780848503113},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4586184024810791},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.4424090087413788},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.43387699127197266},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.423331618309021},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3354707360267639},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3247051239013672},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2434634268283844},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24057382345199585},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2296472191810608},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.162490576505661}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7214056253433228},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4980456829071045},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.48646780848503113},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4586184024810791},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.4424090087413788},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.43387699127197266},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.423331618309021},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3354707360267639},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3247051239013672},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2434634268283844},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24057382345199585},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2296472191810608},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.162490576505661}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad457","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad457","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad457/50959387/btad457.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37490428","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37490428","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10400376","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10400376","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10400376/pdf/btad457.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad457","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad457","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad457/50959387/btad457.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6800000071525574}],"awards":[{"id":"https://openalex.org/G1708074562","display_name":null,"funder_award_id":"20-74-10075","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320324099","display_name":"Russian Science Foundation","ror":"https://ror.org/03y2gwe85"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4385237450.pdf"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1987122345","https://openalex.org/W2008083519","https://openalex.org/W2026690931","https://openalex.org/W2108011868","https://openalex.org/W2305687918","https://openalex.org/W2574732129","https://openalex.org/W2990395719","https://openalex.org/W3023962428","https://openalex.org/W3027404681","https://openalex.org/W3092421956","https://openalex.org/W3092624702","https://openalex.org/W3203588026","https://openalex.org/W3206340990","https://openalex.org/W4213140257","https://openalex.org/W4221128536","https://openalex.org/W4280563114","https://openalex.org/W4293569212","https://openalex.org/W4327550249","https://openalex.org/W4361001523"],"related_works":["https://openalex.org/W3023169329","https://openalex.org/W2782165897","https://openalex.org/W2054104202","https://openalex.org/W2139703748","https://openalex.org/W2761254753","https://openalex.org/W2188981919","https://openalex.org/W3084909426","https://openalex.org/W3017669273","https://openalex.org/W4286300144","https://openalex.org/W2909382709"],"abstract_inverted_index":{"https://github.com/autosome-ru/LegNet.":[0],"The":[1],"GitHub":[2],"repository":[3],"includes":[4],"Jupyter":[5],"Notebook":[6],"tutorials":[7],"and":[8],"Python":[9],"scripts":[10],"under":[11],"the":[12,17,21],"MIT":[13],"license":[14],"to":[15],"reproduce":[16],"results":[18],"presented":[19],"in":[20],"study.":[22]},"counts_by_year":[{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":6}],"updated_date":"2026-01-20T17:24:06.736184","created_date":"2025-10-10T00:00:00"}