{"id":"https://openalex.org/W4384922721","doi":"https://doi.org/10.1093/bioinformatics/btad442","title":"DREAM: an R package for druggability evaluation of human complex diseases","display_name":"DREAM: an R package for druggability evaluation of human complex diseases","publication_year":2023,"publication_date":"2023-07-01","ids":{"openalex":"https://openalex.org/W4384922721","doi":"https://doi.org/10.1093/bioinformatics/btad442","pmid":"https://pubmed.ncbi.nlm.nih.gov/37471593"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad442","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad442","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad442/50918233/btad442.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad442/50918233/btad442.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101807666","display_name":"Antonio Federico","orcid":"https://orcid.org/0000-0003-2554-9879"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Antonio Federico","raw_affiliation_strings":["Division of Pharmaceutical Biosciences, Faculty of Pharmacy , University of Helsinki , Helsinki 00100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","Tampere Institute for Advanced Study, Tampere University , Tampere 33100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","Tampere Institute for Advanced Study, Tampere University, Tampere, 33100, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pharmaceutical Biosciences, Faculty of Pharmacy , University of Helsinki , Helsinki 00100, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677"]},{"raw_affiliation_string":"Tampere Institute for Advanced Study, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677","https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]},{"raw_affiliation_string":"Tampere Institute for Advanced Study, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025810407","display_name":"Michele Fratello","orcid":"https://orcid.org/0000-0002-3997-2339"},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Michele Fratello","raw_affiliation_strings":["Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032173283","display_name":"Alisa Pavel","orcid":"https://orcid.org/0000-0002-2983-0214"},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Alisa Pavel","raw_affiliation_strings":["Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland"],"raw_orcid":"https://orcid.org/0000-0002-2983-0214","affiliations":[{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010918025","display_name":"Lena M\u00f6bus","orcid":"https://orcid.org/0000-0003-0685-0893"},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Lena M\u00f6bus","raw_affiliation_strings":["Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054987771","display_name":"Giusy del Giudice","orcid":"https://orcid.org/0000-0003-0999-4796"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Giusy del Giudice","raw_affiliation_strings":["Division of Pharmaceutical Biosciences, Faculty of Pharmacy , University of Helsinki , Helsinki 00100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pharmaceutical Biosciences, Faculty of Pharmacy , University of Helsinki , Helsinki 00100, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041632230","display_name":"Angela Serra","orcid":"https://orcid.org/0000-0002-3374-1492"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Angela Serra","raw_affiliation_strings":["Division of Pharmaceutical Biosciences, Faculty of Pharmacy , University of Helsinki , Helsinki 00100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","Tampere Institute for Advanced Study, Tampere University , Tampere 33100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","Tampere Institute for Advanced Study, Tampere University, Tampere, 33100, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pharmaceutical Biosciences, Faculty of Pharmacy , University of Helsinki , Helsinki 00100, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677"]},{"raw_affiliation_string":"Tampere Institute for Advanced Study, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677","https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]},{"raw_affiliation_string":"Tampere Institute for Advanced Study, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028682033","display_name":"Dario Greco","orcid":"https://orcid.org/0000-0001-9195-9003"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I2800229700","display_name":"Helsinki Institute of Physics","ror":"https://ror.org/01x2x1522","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I2800229700","https://openalex.org/I63548447","https://openalex.org/I94722563","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Dario Greco","raw_affiliation_strings":["Division of Pharmaceutical Biosciences, Faculty of Pharmacy , University of Helsinki , Helsinki 00100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","Institute of Biotechnology, University of Helsinki , Helsinki 00100, Finland","Tampere Institute for Advanced Study, Tampere University , Tampere 33100, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","Institute of Biotechnology, University of Helsinki, Helsinki, 00100, Finland","Tampere Institute for Advanced Study, Tampere University, Tampere, 33100, Finland"],"raw_orcid":"https://orcid.org/0000-0001-9195-9003","affiliations":[{"raw_affiliation_string":"Division of Pharmaceutical Biosciences, Faculty of Pharmacy , University of Helsinki , Helsinki 00100, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677"]},{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki , Helsinki 00100, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I2800229700"]},{"raw_affiliation_string":"Tampere Institute for Advanced Study, Tampere University , Tampere 33100, Finland","institution_ids":["https://openalex.org/I150589677","https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]},{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, Helsinki, 00100, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I2800229700"]},{"raw_affiliation_string":"Tampere Institute for Advanced Study, Tampere University, Tampere, 33100, Finland","institution_ids":["https://openalex.org/I166825849"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5028682033"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I150589677","https://openalex.org/I166825849","https://openalex.org/I2800229700","https://openalex.org/I4210133110"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":4574,"currency":"EUR","value_usd":4933},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09823622,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"39","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7795000076293945,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.7795000076293945,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10837","display_name":"Dermatology and Skin Diseases","score":0.038600001484155655,"subfield":{"id":"https://openalex.org/subfields/2708","display_name":"Dermatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.025499999523162842,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.7832285761833191},{"id":"https://openalex.org/keywords/druggability","display_name":"Druggability","score":0.7638237476348877},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7530078887939453},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6502471566200256},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.619509220123291},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5255932807922363},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.4473933279514313},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.4458009600639343},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.44563862681388855},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.3616161644458771},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35694822669029236},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32440489530563354},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.32124537229537964},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23743155598640442},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16482806205749512},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.12787911295890808},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12681451439857483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09079042077064514}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.7832285761833191},{"id":"https://openalex.org/C10679952","wikidata":"https://www.wikidata.org/wiki/Q5308937","display_name":"Druggability","level":3,"score":0.7638237476348877},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7530078887939453},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6502471566200256},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.619509220123291},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5255932807922363},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.4473933279514313},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.4458009600639343},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.44563862681388855},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.3616161644458771},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35694822669029236},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32440489530563354},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.32124537229537964},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23743155598640442},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16482806205749512},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.12787911295890808},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12681451439857483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09079042077064514},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad442","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad442","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad442/50918233/btad442.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37471593","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37471593","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10374489","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10374489","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10374489/pdf/btad442.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:trepo.tuni.fi:10024/207763","is_oa":true,"landing_page_url":"https://trepo.tuni.fi/handle/10024/207763","pdf_url":null,"source":{"id":"https://openalex.org/S4306401860","display_name":"Tampere University Institutional Repository (Tampere University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I150589677","host_organization_name":"Tampere University of Applied Sciences","host_organization_lineage":["https://openalex.org/I150589677"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad442","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad442","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad442/50918233/btad442.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"No poverty","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/1"}],"awards":[{"id":"https://openalex.org/G4869243700","display_name":null,"funder_award_id":"821511","funder_id":"https://openalex.org/F4320326631","funder_display_name":"Innovative Medicines Initiative"}],"funders":[{"id":"https://openalex.org/F4320326631","display_name":"Innovative Medicines Initiative","ror":"https://ror.org/019af4n30"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4384922721.pdf"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W2049018089","https://openalex.org/W2049235577","https://openalex.org/W2079214249","https://openalex.org/W2083258699","https://openalex.org/W2099536383","https://openalex.org/W2113072832","https://openalex.org/W2123454534","https://openalex.org/W2146416540","https://openalex.org/W2293657663","https://openalex.org/W2299976441","https://openalex.org/W2612467560","https://openalex.org/W2794191669","https://openalex.org/W2809965712","https://openalex.org/W2889583031","https://openalex.org/W2896002881","https://openalex.org/W2902535304","https://openalex.org/W2921846919","https://openalex.org/W2984998864","https://openalex.org/W3039654485","https://openalex.org/W3092313756","https://openalex.org/W3206128202","https://openalex.org/W4311730173","https://openalex.org/W6697655465","https://openalex.org/W6752668878"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4320009247","https://openalex.org/W4206422705","https://openalex.org/W3186872001","https://openalex.org/W3174741986","https://openalex.org/W4387302591"],"abstract_inverted_index":{"MOTIVATION:":[0],"De":[1],"novo":[2],"drug":[3,40,73,108,162,204],"development":[4,38],"is":[5,89,150,191,244,254],"a":[6,186,234],"long":[7],"and":[8,29,99,110,138,147,182],"expensive":[9],"process":[10],"that":[11,81],"poses":[12],"significant":[13],"challenges":[14],"from":[15],"the":[16,19,23,26,34,37,45,64,76,103,120,131,136,153,158,166,194,209,226,229],"design":[17],"to":[18,36,69,179,193,224],"preclinical":[20],"testing,":[21],"making":[22],"introduction":[24],"into":[25,129,165],"market":[27],"slow":[28],"difficult.":[30],"This":[31],"limitation":[32],"paved":[33],"way":[35],"of":[39,47,78,105,135,152,161,197,200,215,228,252],"repurposing,":[41],"which":[42],"consists":[43],"in":[44,63,67,85,185],"re-usage":[46],"already":[48],"approved":[49],"drugs,":[50],"developed":[51],"for":[52,219],"other":[53,121],"therapeutic":[54],"indications.":[55],"Although":[56],"several":[57],"efforts":[58],"have":[59,82],"been":[60,83],"carried":[61],"out":[62],"last":[65],"decade":[66],"order":[68,223],"achieve":[70],"clinically":[71],"relevant":[72],"repurposing":[74,163,205],"predictions,":[75],"amount":[77],"repurposed":[79],"drugs":[80,137,216],"employed":[84],"actual":[86],"pharmacological":[87],"therapies":[88],"still":[90],"limited.":[91],"On":[92,119],"one":[93,151],"hand,":[94,122],"mechanistic":[95,146,181],"approaches,":[96,124],"including":[97,125],"profile-based":[98],"network-based":[100],"methods,":[101,127],"exploit":[102],"wealth":[104],"data":[106],"about":[107],"sensitivity":[109],"perturbational":[111],"profiles":[112],"as":[113,115],"well":[114],"disease":[116],"transcriptomics":[117],"profiles.":[118],"chemocentric":[123,148,183],"structure-based":[126],"take":[128],"consideration":[130],"intrinsic":[132],"structural":[133],"properties":[134],"their":[139],"molecular":[140],"targets.":[141],"The":[142,249],"poor":[143,159],"integration":[144],"between":[145],"approaches":[149,184],"main":[154],"limiting":[155],"factors":[156],"behind":[157],"translatability":[160],"predictions":[164],"clinics.":[167],"RESULTS:":[168],"In":[169,207,222],"this":[170],"work,":[171],"we":[172,232],"introduce":[173],"DREAM,":[174],"an":[175],"R":[176],"package":[177],"aimed":[178],"integrate":[180],"unified":[187],"computational":[188],"workflow.":[189],"DREAM":[190,230,243,253],"devoted":[192],"druggability":[195],"evaluation":[196],"pathological":[198],"conditions":[199],"interest,":[201],"leveraging":[202],"robust":[203],"predictions.":[206],"addition,":[208],"user":[210],"can":[211],"derive":[212],"optimized":[213],"sets":[214],"putatively":[217],"suitable":[218],"combination":[220],"therapy.":[221],"show":[225],"functionalities":[227],"package,":[231],"report":[233],"case":[235],"study":[236],"on":[237],"atopic":[238],"dermatitis.":[239],"AVAILABILITY":[240],"AND":[241],"IMPLEMENTATION:":[242],"freely":[245],"available":[246,255],"at":[247],"https://github.com/fhaive/dream.":[248],"docker":[250],"image":[251],"at:":[256],"https://hub.docker.com/r/fhaive/dream.":[257]},"counts_by_year":[],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
