{"id":"https://openalex.org/W4382599418","doi":"https://doi.org/10.1093/bioinformatics/btad418","title":"KG-Hub\u2014building and exchanging biological knowledge graphs","display_name":"KG-Hub\u2014building and exchanging biological knowledge graphs","publication_year":2023,"publication_date":"2023-06-30","ids":{"openalex":"https://openalex.org/W4382599418","doi":"https://doi.org/10.1093/bioinformatics/btad418","pmid":"https://pubmed.ncbi.nlm.nih.gov/37389415"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad418","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad418","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad418/50757142/btad418.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad418/50757142/btad418.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035050896","display_name":"J. Harry Caufield","orcid":"https://orcid.org/0000-0001-5705-7831"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J Harry Caufield","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States"],"raw_orcid":"https://orcid.org/0000-0001-5705-7831","affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032671904","display_name":"Tim Putman","orcid":"https://orcid.org/0000-0002-4291-0737"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tim Putman","raw_affiliation_strings":["Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061863544","display_name":"Kevin Schaper","orcid":"https://orcid.org/0000-0003-3311-7320"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Schaper","raw_affiliation_strings":["Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065736299","display_name":"Deepak Unni","orcid":"https://orcid.org/0000-0002-3583-7340"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Deepak R Unni","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics , Basel 1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics , Basel 1015, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057750338","display_name":"Harshad Hegde","orcid":"https://orcid.org/0000-0002-2411-565X"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harshad Hegde","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031147343","display_name":"Tiffany J. Callahan","orcid":"https://orcid.org/0000-0002-8169-9049"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tiffany J Callahan","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University Irving Medical Center , New York, NY 10032, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University Irving Medical Center , New York, NY 10032, United States","institution_ids":["https://openalex.org/I2799503643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034969250","display_name":"Luca Cappelletti","orcid":"https://orcid.org/0000-0002-1269-2038"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Cappelletti","raw_affiliation_strings":["Department of Computer Science, University of Milano , Milan 20126, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Milano , Milan 20126, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019077587","display_name":"Sierra Moxon","orcid":"https://orcid.org/0000-0002-8719-7760"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sierra A T Moxon","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032995957","display_name":"Vida Ravanmehr","orcid":"https://orcid.org/0000-0002-3971-1083"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vida Ravanmehr","raw_affiliation_strings":["Department of Lymphoma-Myeloma, MD Anderson Cancer Center , Houston, TX 77030, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Lymphoma-Myeloma, MD Anderson Cancer Center , Houston, TX 77030, United States","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089928926","display_name":"Seth Carbon","orcid":"https://orcid.org/0000-0001-8244-1536"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seth Carbon","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068280078","display_name":"Lauren Chan","orcid":"https://orcid.org/0000-0002-7463-6306"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lauren E Chan","raw_affiliation_strings":["College of Public Health and Human Sciences, Oregon State University , Corvallis, OR 97331, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Public Health and Human Sciences, Oregon State University , Corvallis, OR 97331, United States","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030245859","display_name":"Katherina G Cortes","orcid":"https://orcid.org/0000-0002-9489-3158"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katherina Cortes","raw_affiliation_strings":["Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States"],"raw_orcid":"https://orcid.org/0000-0002-9489-3158","affiliations":[{"raw_affiliation_string":"Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050786158","display_name":"Kent Shefchek","orcid":"https://orcid.org/0000-0001-6439-2224"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kent A Shefchek","raw_affiliation_strings":["Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041461810","display_name":"Glass Elsarboukh","orcid":"https://orcid.org/0000-0001-8272-7198"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Glass Elsarboukh","raw_affiliation_strings":["Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010772686","display_name":"Jim Balhoff","orcid":null},"institutions":[{"id":"https://openalex.org/I69048370","display_name":"Renaissance Computing Institute","ror":"https://ror.org/01s91ey96","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535","https://openalex.org/I170897317","https://openalex.org/I69048370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jim Balhoff","raw_affiliation_strings":["Renaissance Computing Institute, University of North Carolina , Chapel Hill, NC 27517, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Renaissance Computing Institute, University of North Carolina , Chapel Hill, NC 27517, United States","institution_ids":["https://openalex.org/I69048370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038388584","display_name":"Tommaso Fontana","orcid":"https://orcid.org/0000-0002-1511-855X"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tommaso Fontana","raw_affiliation_strings":["Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano , Milan 20133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano , Milan 20133, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040603724","display_name":"Nicolas Matentzoglu","orcid":"https://orcid.org/0000-0002-7356-1779"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicolas Matentzoglu","raw_affiliation_strings":["Semanticly , Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Semanticly , Athens, Greece","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068637828","display_name":"Richard Bruskiewich","orcid":"https://orcid.org/0000-0002-4447-5978"},"institutions":[{"id":"https://openalex.org/I126452172","display_name":"Aptiv (United States)","ror":"https://ror.org/02967gp58","country_code":"US","type":"company","lineage":["https://openalex.org/I126452172","https://openalex.org/I4210107152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard M Bruskiewich","raw_affiliation_strings":["STAR Informatics, Delphinai Corporation , Sooke, BC V9Z 0M3, Canada","STAR Informatics, Delphinai Corporation, Sooke, BC, V9Z 0M3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"STAR Informatics, Delphinai Corporation , Sooke, BC V9Z 0M3, Canada","institution_ids":["https://openalex.org/I126452172"]},{"raw_affiliation_string":"STAR Informatics, Delphinai Corporation, Sooke, BC, V9Z 0M3, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028696519","display_name":"Anne Thessen","orcid":"https://orcid.org/0000-0002-2908-3327"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anne E Thessen","raw_affiliation_strings":["Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States"],"raw_orcid":"https://orcid.org/0000-0002-2908-3327","affiliations":[{"raw_affiliation_string":"Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031007073","display_name":"Nomi L. Harris","orcid":"https://orcid.org/0000-0001-6315-3707"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nomi L Harris","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States"],"raw_orcid":"https://orcid.org/0000-0001-6315-3707","affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106027423","display_name":"M\u00f3nica Mu\u00f1oz-Torres","orcid":"https://orcid.org/0000-0001-8430-6039"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Monica C Munoz-Torres","raw_affiliation_strings":["Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa A Haendel","raw_affiliation_strings":["Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States"],"raw_orcid":"https://orcid.org/0000-0001-9114-8737","affiliations":[{"raw_affiliation_string":"Anschutz Medical Campus, University of Colorado , Aurora, CO 80045, United States","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033225381","display_name":"Peter N. Robinson","orcid":"https://orcid.org/0000-0002-0736-9199"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter N Robinson","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine , Farmington, CT 06032, United States"],"raw_orcid":"https://orcid.org/0000-0002-0736-9199","affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine , Farmington, CT 06032, United States","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062038813","display_name":"Marcin P. Joachimiak","orcid":"https://orcid.org/0000-0001-8175-045X"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcin P Joachimiak","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J Mungall","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States"],"raw_orcid":"https://orcid.org/0000-0002-6601-2165","affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073533486","display_name":"Justin Reese","orcid":"https://orcid.org/0000-0002-2170-2250"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin T Reese","raw_affiliation_strings":["Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States"],"raw_orcid":"https://orcid.org/0000-0002-2170-2250","affiliations":[{"raw_affiliation_string":"Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory , Berkeley, CA 94720, United States","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":26,"corresponding_author_ids":["https://openalex.org/A5035050896"],"corresponding_institution_ids":["https://openalex.org/I148283060"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.8841,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.95700672,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"39","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7113000154495239,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7113000154495239,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.2167000025510788,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.014499999582767487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8161251544952393},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.7341948747634888},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6670307517051697},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5654878616333008},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5299999117851257},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5049543976783752},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.45109981298446655},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.43162161111831665},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.42762476205825806},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.41802671551704407},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36223965883255005},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3437884449958801},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3017326593399048},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.20721471309661865},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15326997637748718},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1360398530960083},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12786558270454407}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8161251544952393},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.7341948747634888},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6670307517051697},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5654878616333008},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5299999117851257},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5049543976783752},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.45109981298446655},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.43162161111831665},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.42762476205825806},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.41802671551704407},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36223965883255005},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3437884449958801},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3017326593399048},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.20721471309661865},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15326997637748718},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1360398530960083},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12786558270454407},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035583","descriptor_name":"Rare Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btad418","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad418","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad418/50757142/btad418.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37389415","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37389415","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt3w19w2dh","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3w19w2dh","pdf_url":"https://escholarship.org/content/qt3w19w2dh/qt3w19w2dh.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 39, iss 7","raw_type":"article"},{"id":"pmh:oai:osti.gov:2234091","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2234091","pdf_url":"https://www.osti.gov/servlets/purl/2234091","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10336030","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10336030","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10336030/pdf/btad418.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:mouseion.jax.org:stfb2023-1178","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2023/202","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2023","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad418","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad418","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad418/50757142/btad418.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6499999761581421}],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1286251239","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G216544311","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G220679179","display_name":null,"funder_award_id":"1RM1HG010860-01","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2503023272","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2539837713","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2776628454","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3188360120","display_name":null,"funder_award_id":"OT2TR003449","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G3463542409","display_name":null,"funder_award_id":"1940330","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3941858594","display_name":null,"funder_award_id":"5U24HG011449-02","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4121577249","display_name":null,"funder_award_id":"5R24OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4482483330","display_name":null,"funder_award_id":"#1RM1HG010860-01","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4963411061","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5123489780","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G6322356828","display_name":null,"funder_award_id":"U24 GM143402","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6767173602","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7037411614","display_name":null,"funder_award_id":"U24 GM143402","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7203387412","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G7233692708","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7308218686","display_name":null,"funder_award_id":"5U24HG011449","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7538560101","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7672463193","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7885640646","display_name":null,"funder_award_id":"OD #5R24OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G805243471","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8431251193","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G8628316612","display_name":null,"funder_award_id":"1RM1HG010860","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4382599418.pdf"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W102708294","https://openalex.org/W1548654514","https://openalex.org/W1935434993","https://openalex.org/W2049916132","https://openalex.org/W2102381086","https://openalex.org/W2123152121","https://openalex.org/W2462053388","https://openalex.org/W2539985226","https://openalex.org/W2557074642","https://openalex.org/W2558643140","https://openalex.org/W2585898252","https://openalex.org/W2735585131","https://openalex.org/W2886613725","https://openalex.org/W2903298154","https://openalex.org/W2911932738","https://openalex.org/W2951441387","https://openalex.org/W2961798429","https://openalex.org/W2966864197","https://openalex.org/W2972021296","https://openalex.org/W2998922495","https://openalex.org/W3022051079","https://openalex.org/W3033896008","https://openalex.org/W3041467169","https://openalex.org/W3088646411","https://openalex.org/W3093150592","https://openalex.org/W3102245839","https://openalex.org/W3106811464","https://openalex.org/W3118656236","https://openalex.org/W3126308468","https://openalex.org/W3134093132","https://openalex.org/W3165291537","https://openalex.org/W3168771278","https://openalex.org/W3170771812","https://openalex.org/W3176163250","https://openalex.org/W3185323030","https://openalex.org/W3207365242","https://openalex.org/W4200481829","https://openalex.org/W4210706440","https://openalex.org/W4212919921","https://openalex.org/W4280531656","https://openalex.org/W4281704579","https://openalex.org/W4298005542","https://openalex.org/W4307717106","https://openalex.org/W4309571466","https://openalex.org/W4382139355","https://openalex.org/W6764123763","https://openalex.org/W6766976422","https://openalex.org/W6803015733","https://openalex.org/W6845729251"],"related_works":["https://openalex.org/W1976073696","https://openalex.org/W3165804307","https://openalex.org/W3184846108","https://openalex.org/W4393150518","https://openalex.org/W3015936091","https://openalex.org/W4255790880","https://openalex.org/W2122958656","https://openalex.org/W1985093619","https://openalex.org/W1974908123","https://openalex.org/W4292181833"],"abstract_inverted_index":{"MOTIVATION:":[0],"Knowledge":[1],"graphs":[2,62],"(KGs)":[3],"are":[4],"a":[5,22,42,55],"powerful":[6],"approach":[7],"for":[8,25,60,71,167],"integrating":[9],"heterogeneous":[10],"data":[11,69,90],"and":[12,17,28,49,82,93,108,129,141,163,170],"making":[13],"inferences":[14],"in":[15],"biology":[16],"many":[18],"other":[19],"domains,":[20],"but":[21],"coherent":[23],"solution":[24],"constructing,":[26],"exchanging,":[27],"facilitating":[29],"the":[30],"downstream":[31],"use":[32,120],"of":[33,51,77,88,102,111,165],"KGs":[34],"is":[35,134,145],"lacking.":[36],"RESULTS:":[37],"Here":[38],"we":[39],"present":[40],"KG-Hub,":[41],"platform":[43],"that":[44],"enables":[45],"standardized":[46],"construction,":[47],"exchange,":[48],"reuse":[50,110],"KGs.":[52,143],"Features":[53],"include":[54],"simple,":[56],"modular":[57],"extract-transform-load":[58],"pattern":[59],"producing":[61],"compliant":[63],"with":[64,97,136,149],"Biolink":[65],"Model":[66],"(a":[67],"high-level":[68],"model":[70],"standardizing":[72],"biological":[73],"data),":[74],"easy":[75,109],"integration":[76],"any":[78],"OBO":[79],"(Open":[80],"Biological":[81],"Biomedical":[83],"Ontologies)":[84],"ontology,":[85],"cached":[86],"downloads":[87],"upstream":[89],"sources,":[91],"versioned":[92],"automatically":[94],"updated":[95],"builds":[96],"stable":[98],"URLs,":[99],"web-browsable":[100],"storage":[101],"KG":[103],"artifacts":[104],"on":[105],"cloud":[106],"infrastructure,":[107],"transformed":[112],"subgraphs":[113],"across":[114],"projects.":[115],"Current":[116],"KG-Hub":[117,133,144],"projects":[118],"span":[119],"cases":[121],"including":[122,160],"COVID-19":[123],"research,":[124],"drug":[125],"repurposing,":[126],"microbial-environmental":[127],"interactions,":[128],"rare":[130],"disease":[131],"research.":[132],"equipped":[135],"tooling":[137],"to":[138],"easily":[139],"analyze":[140],"manipulate":[142],"also":[146],"tightly":[147],"integrated":[148],"graph":[150,158],"machine":[151],"learning":[152],"(ML)":[153],"tools":[154],"which":[155],"allow":[156],"automated":[157],"ML,":[159],"node":[161,171],"embeddings":[162],"training":[164],"models":[166],"link":[168],"prediction":[169],"classification.":[172],"AVAILABILITY":[173],"AND":[174],"IMPLEMENTATION:":[175],"https://kghub.org.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6}],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2025-10-10T00:00:00"}
