{"id":"https://openalex.org/W4381851928","doi":"https://doi.org/10.1093/bioinformatics/btad405","title":"ESPERANTO: a GLP-field sEmi-SuPERvised toxicogenomics metadAta curatioN TOol","display_name":"ESPERANTO: a GLP-field sEmi-SuPERvised toxicogenomics metadAta curatioN TOol","publication_year":2023,"publication_date":"2023-06-01","ids":{"openalex":"https://openalex.org/W4381851928","doi":"https://doi.org/10.1093/bioinformatics/btad405","pmid":"https://pubmed.ncbi.nlm.nih.gov/37354497"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad405","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad405","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad405/50696365/btad405.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad405/50696365/btad405.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007487786","display_name":"Emanuele Di Lieto","orcid":"https://orcid.org/0009-0000-3329-8649"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Emanuele Di Lieto","raw_affiliation_strings":["FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041632230","display_name":"Angela Serra","orcid":"https://orcid.org/0000-0002-3374-1492"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Angela Serra","raw_affiliation_strings":["FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","Tampere Institute for Advanced Study , Tampere, 33520, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]},{"raw_affiliation_string":"Tampere Institute for Advanced Study , Tampere, 33520, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092251575","display_name":"Simo Inkala","orcid":"https://orcid.org/0009-0002-2091-8436"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Simo Iisakki Inkala","raw_affiliation_strings":["FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003627670","display_name":"Laura Aliisa Saarim\u00e4ki","orcid":"https://orcid.org/0000-0003-1996-286X"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Laura Aliisa Saarim\u00e4ki","raw_affiliation_strings":["FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054987771","display_name":"Giusy del Giudice","orcid":"https://orcid.org/0000-0003-0999-4796"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Giusy del Giudice","raw_affiliation_strings":["FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025810407","display_name":"Michele Fratello","orcid":"https://orcid.org/0000-0002-3997-2339"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Michele Fratello","raw_affiliation_strings":["FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007462771","display_name":"Veera Hautanen","orcid":"https://orcid.org/0000-0002-6278-4109"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Veera Hautanen","raw_affiliation_strings":["FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102986661","display_name":"Maria Emilia Annala","orcid":"https://orcid.org/0009-0008-3426-9653"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Maria Annala","raw_affiliation_strings":["FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101807666","display_name":"Antonio Federico","orcid":"https://orcid.org/0000-0003-2554-9879"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Antonio Federico","raw_affiliation_strings":["FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","Tampere Institute for Advanced Study , Tampere, 33520, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]},{"raw_affiliation_string":"Tampere Institute for Advanced Study , Tampere, 33520, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028682033","display_name":"Dario Greco","orcid":"https://orcid.org/0000-0001-9195-9003"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Dario Greco","raw_affiliation_strings":["Division of Pharmaceutical Biosciences, Faculty of Pharmacy, University of Helsinki , Helsinki 00790, Finland","FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","Institute of Biotechnology, Helsinki Institute of Life Sciences (HiLife), University of Helsinki , Helsinki 00790, Finland"],"raw_orcid":"https://orcid.org/0000-0001-9195-9003","affiliations":[{"raw_affiliation_string":"Division of Pharmaceutical Biosciences, Faculty of Pharmacy, University of Helsinki , Helsinki 00790, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"FHAIVE, Faculty of Medicine and Health Technology, Tampere University , Tampere 33520, Finland","institution_ids":["https://openalex.org/I166825849"]},{"raw_affiliation_string":"Institute of Biotechnology, Helsinki Institute of Life Sciences (HiLife), University of Helsinki , Helsinki 00790, Finland","institution_ids":["https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5028682033"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I166825849"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":4574,"currency":"EUR","value_usd":4933},"fwci":3.9182,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.94117692,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"39","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.3734999895095825,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.3734999895095825,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.303600013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.17710000276565552,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8953109979629517},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7798995971679688},{"id":"https://openalex.org/keywords/harmonization","display_name":"Harmonization","score":0.7167898416519165},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6851414442062378},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.5942875146865845},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.48043060302734375},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.46855029463768005},{"id":"https://openalex.org/keywords/toxicogenomics","display_name":"Toxicogenomics","score":0.45399460196495056},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.45311060547828674},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.43685218691825867},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42268267273902893},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.41695961356163025},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3340102434158325},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16423875093460083},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07834476232528687}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8953109979629517},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7798995971679688},{"id":"https://openalex.org/C2779962950","wikidata":"https://www.wikidata.org/wiki/Q5659376","display_name":"Harmonization","level":2,"score":0.7167898416519165},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6851414442062378},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.5942875146865845},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.48043060302734375},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.46855029463768005},{"id":"https://openalex.org/C93231420","wikidata":"https://www.wikidata.org/wiki/Q841450","display_name":"Toxicogenomics","level":4,"score":0.45399460196495056},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.45311060547828674},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.43685218691825867},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42268267273902893},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.41695961356163025},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3340102434158325},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16423875093460083},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07834476232528687},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad405","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad405","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad405/50696365/btad405.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37354497","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37354497","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10313344","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10313344","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10313344/pdf/btad405.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:trepo.tuni.fi:10024/206551","is_oa":true,"landing_page_url":"https://trepo.tuni.fi/handle/10024/206551","pdf_url":null,"source":{"id":"https://openalex.org/S4306401860","display_name":"Tampere University Institutional Repository (Tampere University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I150589677","host_organization_name":"Tampere University of Applied Sciences","host_organization_lineage":["https://openalex.org/I150589677"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad405","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad405","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad405/50696365/btad405.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G413401100","display_name":"Development and Implementation of a Sustainable Modelling Platform for NanoInformatics.","funder_award_id":"814426","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"HORIZON2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5445264010","display_name":null,"funder_award_id":"322761","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G6933804295","display_name":null,"funder_award_id":"101043848","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4381851928.pdf"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2302501749","https://openalex.org/W2772431536","https://openalex.org/W2789889445","https://openalex.org/W3012427063","https://openalex.org/W3126200367","https://openalex.org/W3212152134","https://openalex.org/W4200363494","https://openalex.org/W4226036563"],"related_works":["https://openalex.org/W1493577616","https://openalex.org/W4206229536","https://openalex.org/W2061516382","https://openalex.org/W2480056510","https://openalex.org/W2412623563","https://openalex.org/W1964419532","https://openalex.org/W1541278453","https://openalex.org/W2768577102","https://openalex.org/W2368748027","https://openalex.org/W196221469"],"abstract_inverted_index":{"SUMMARY:":[0],"Biological":[1],"data":[2,34,54],"repositories":[3],"are":[4,148,166],"an":[5,59,77,111],"invaluable":[6],"source":[7],"of":[8,16,18,33,45,68,88,110,132,138],"publicly":[9],"available":[10,150,167],"research":[11],"evidence.":[12],"Unfortunately,":[13],"the":[14,19,108,122,133,136,159,169],"lack":[15],"convergence":[17],"scientific":[20],"community":[21],"on":[22,53],"a":[23,82,96,128],"common":[24],"metadata":[25,90,104,125],"annotation":[26],"strategy":[27],"has":[28],"resulted":[29],"in":[30,66,95,124,127,162],"large":[31],"amounts":[32],"with":[35,107],"low":[36],"FAIRness":[37,94],"(Findable,":[38],"Accessible,":[39],"Interoperable":[40],"and":[41,70,86,91,135,144,158],"Reusable).":[42],"The":[43,101,115,156],"possibility":[44],"generating":[46],"high-quality":[47],"insights":[48],"from":[49],"their":[50,93],"integration":[51,87],"relies":[52],"curation,":[55],"which":[56],"is":[57,105,118],"typically":[58],"error-prone":[60],"process":[61],"while":[62],"also":[63],"being":[64],"expensive":[65],"terms":[67],"time":[69],"human":[71],"labour.":[72],"Here,":[73],"we":[74],"present":[75],"ESPERANTO,":[76],"innovative":[78],"framework":[79],"that":[80],"enables":[81],"standardized":[83],"semi-supervised":[84],"harmonization":[85,102,126],"toxicogenomics":[89],"increases":[92],"Good":[97],"Laboratory":[98],"Practice-compliant":[99],"fashion.":[100],"across":[103],"guaranteed":[106],"definition":[109],"ad":[112],"hoc":[113],"vocabulary.":[114],"tool":[116],"interface":[117],"designed":[119],"to":[120],"support":[121],"user":[123,146],"user-friendly":[129],"manner,":[130],"regardless":[131],"background":[134],"type":[137],"expertise.":[139],"AVAILABILITY":[140],"AND":[141],"IMPLEMENTATION:":[142],"ESPERANTO":[143],"its":[145],"manual":[147],"freely":[149],"for":[151],"academic":[152],"purposes":[153],"at":[154,168],"https://github.com/fhaive/esperanto.":[155],"input":[157],"results":[160],"showcased":[161],"Supplementary":[163],"File":[164],"S1":[165],"same":[170],"link.":[171]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2023-06-25T00:00:00"}