{"id":"https://openalex.org/W4379598318","doi":"https://doi.org/10.1093/bioinformatics/btad363","title":"MTM: a multi-task learning framework to predict individualized tissue gene expression profiles","display_name":"MTM: a multi-task learning framework to predict individualized tissue gene expression profiles","publication_year":2023,"publication_date":"2023-06-01","ids":{"openalex":"https://openalex.org/W4379598318","doi":"https://doi.org/10.1093/bioinformatics/btad363","pmid":"https://pubmed.ncbi.nlm.nih.gov/37279739"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad363","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad363","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad363/50518956/btad363.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad363/50518956/btad363.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086876157","display_name":"Guangyi He","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guangyi He","raw_affiliation_strings":["Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University , Beijing 100191, China","Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University, Beijing, 100191, China"],"affiliations":[{"raw_affiliation_string":"Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University , Beijing 100191, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University, Beijing, 100191, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076637664","display_name":"Maiyue Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Maiyue Chen","raw_affiliation_strings":["School of Artificial Intelligence, Peking University , Beijing 100191, China","School of Artificial Intelligence, Peking University, Beijing, 100191, China"],"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Peking University , Beijing 100191, China","institution_ids":["https://openalex.org/I4210100255"]},{"raw_affiliation_string":"School of Artificial Intelligence, Peking University, Beijing, 100191, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102936149","display_name":"Yingnan Bian","orcid":"https://orcid.org/0000-0002-8651-8737"},"institutions":[{"id":"https://openalex.org/I4210093596","display_name":"Shanghai Light Industry Research Institute","ror":"https://ror.org/00ky61211","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210093596"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingnan Bian","raw_affiliation_strings":["Enlight Medical Technologies (Shanghai) Co., Ltd , Shanghai 201318, China","Enlight Medical Technologies (Shanghai) Co., Ltd, Shanghai, 201318, China"],"affiliations":[{"raw_affiliation_string":"Enlight Medical Technologies (Shanghai) Co., Ltd , Shanghai 201318, China","institution_ids":["https://openalex.org/I4210093596"]},{"raw_affiliation_string":"Enlight Medical Technologies (Shanghai) Co., Ltd, Shanghai, 201318, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083924807","display_name":"Ence Yang","orcid":"https://orcid.org/0000-0002-9526-2737"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210115644","display_name":"Chinese Institute for Brain Research","ror":"https://ror.org/029819q61","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210115644"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ence Yang","raw_affiliation_strings":["Chinese Institute for Brain Research , Beijing 102206, China","Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University , Beijing 100191, China","Chinese Institute for Brain Research, Beijing, 102206, China","Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University, Beijing, 100191, China"],"affiliations":[{"raw_affiliation_string":"Chinese Institute for Brain Research , Beijing 102206, China","institution_ids":["https://openalex.org/I4210115644"]},{"raw_affiliation_string":"Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University , Beijing 100191, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Chinese Institute for Brain Research, Beijing, 102206, China","institution_ids":["https://openalex.org/I4210115644"]},{"raw_affiliation_string":"Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University, Beijing, 100191, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5086876157"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4568,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.6654357,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"39","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7262601256370544},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5891629457473755},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5148307681083679},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46524250507354736},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.41278672218322754},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3913014531135559},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3545262813568115},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31604886054992676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2420295774936676},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16659629344940186},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11355826258659363},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06976073980331421}],"concepts":[{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7262601256370544},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5891629457473755},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5148307681083679},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46524250507354736},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.41278672218322754},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3913014531135559},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3545262813568115},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31604886054992676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2420295774936676},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16659629344940186},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11355826258659363},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06976073980331421},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad363","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad363","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad363/50518956/btad363.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37279739","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37279739","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10278940","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10278940","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10278940/pdf/btad363.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad363","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad363","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad363/50518956/btad363.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3530239307","display_name":null,"funder_award_id":"NHLBI","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5638990845","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320337349","funder_display_name":"NIH Office of the Director"}],"funders":[{"id":"https://openalex.org/F4320325902","display_name":"Beijing Municipal Science and Technology Commission","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337349","display_name":"NIH Office of the Director","ror":"https://ror.org/00fj8a872"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"},{"id":"https://openalex.org/F4320338403","display_name":"Common Fund","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4379598318.pdf"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W1573602524","https://openalex.org/W1967220865","https://openalex.org/W1976871722","https://openalex.org/W2046831513","https://openalex.org/W2059127997","https://openalex.org/W2060427373","https://openalex.org/W2075037447","https://openalex.org/W2077674526","https://openalex.org/W2101234009","https://openalex.org/W2109363337","https://openalex.org/W2116128732","https://openalex.org/W2117133527","https://openalex.org/W2145191876","https://openalex.org/W2151690149","https://openalex.org/W2165482500","https://openalex.org/W2168114604","https://openalex.org/W2205677430","https://openalex.org/W2209106767","https://openalex.org/W2218033110","https://openalex.org/W2264585211","https://openalex.org/W2278685458","https://openalex.org/W2328892620","https://openalex.org/W2341539131","https://openalex.org/W2524309253","https://openalex.org/W2534390616","https://openalex.org/W2606403603","https://openalex.org/W2759086237","https://openalex.org/W2761275051","https://openalex.org/W2804524829","https://openalex.org/W2810320416","https://openalex.org/W2890718122","https://openalex.org/W2899616402","https://openalex.org/W2901677030","https://openalex.org/W2913340405","https://openalex.org/W2919115771","https://openalex.org/W2934861239","https://openalex.org/W2950235747","https://openalex.org/W2951159567","https://openalex.org/W2959991108","https://openalex.org/W3000350302","https://openalex.org/W3003301247","https://openalex.org/W3016122866","https://openalex.org/W3044522460","https://openalex.org/W3089716446","https://openalex.org/W3096831136","https://openalex.org/W3122075993","https://openalex.org/W3150324899","https://openalex.org/W3156894222","https://openalex.org/W3165151052","https://openalex.org/W3199772305","https://openalex.org/W3205887004","https://openalex.org/W3216759837","https://openalex.org/W4210896630","https://openalex.org/W4221083461","https://openalex.org/W4226348722","https://openalex.org/W4295312788","https://openalex.org/W6675354045","https://openalex.org/W6766978945"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W2328518092","https://openalex.org/W3101249758","https://openalex.org/W2382079200","https://openalex.org/W2374091470","https://openalex.org/W1902660783","https://openalex.org/W4388218547","https://openalex.org/W2379703849","https://openalex.org/W3129895999"],"abstract_inverted_index":{"MTM's":[0],"code":[1],"and":[2],"documentation":[3],"are":[4],"available":[5],"upon":[6],"publication":[7],"on":[8],"GitHub":[9],"(https://github.com/yangence/MTM).":[10]},"counts_by_year":[{"year":2024,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
