{"id":"https://openalex.org/W4379115109","doi":"https://doi.org/10.1093/bioinformatics/btad358","title":"mpwR: an R package for comparing performance of mass spectrometry-based proteomic workflows","display_name":"mpwR: an R package for comparing performance of mass spectrometry-based proteomic workflows","publication_year":2023,"publication_date":"2023-06-01","ids":{"openalex":"https://openalex.org/W4379115109","doi":"https://doi.org/10.1093/bioinformatics/btad358","pmid":"https://pubmed.ncbi.nlm.nih.gov/37267150"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad358","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad358","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad358/50513444/btad358.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad358/50513444/btad358.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092072311","display_name":"Oliver Kardell","orcid":"https://orcid.org/0000-0002-6703-7997"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Kardell","raw_affiliation_strings":["Metabolomics and Proteomics Core (MPC), Helmholtz Zentrum M\u00fcnchen, German Research Center for Environmental Health (GmbH) , 80939 M\u00fcnchen, Germany"],"affiliations":[{"raw_affiliation_string":"Metabolomics and Proteomics Core (MPC), Helmholtz Zentrum M\u00fcnchen, German Research Center for Environmental Health (GmbH) , 80939 M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002610401","display_name":"Stephan Breimann","orcid":"https://orcid.org/0000-0002-0305-3373"},"institutions":[{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stephan Breimann","raw_affiliation_strings":["Biomedical Center, Division of Metabolic Biochemistry, LMU Munich , 81377 M\u00fcnchen, Germany","Department of Genome Oriented Bioinformatics, Technical University Munich, Wissenschaftszentrum Weihenstephan , 85354 Freising, Germany","German Center for Neurodegenerative Diseases (DZNE) Munich, DZNE , 81377 M\u00fcnchen, Germany","Department of Genome Oriented Bioinformatics, Technical University Munich, Wissenschaftszentrum Weihenstephan, Freising, 85354"],"affiliations":[{"raw_affiliation_string":"Biomedical Center, Division of Metabolic Biochemistry, LMU Munich , 81377 M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Department of Genome Oriented Bioinformatics, Technical University Munich, Wissenschaftszentrum Weihenstephan , 85354 Freising, Germany","institution_ids":["https://openalex.org/I309496635"]},{"raw_affiliation_string":"German Center for Neurodegenerative Diseases (DZNE) Munich, DZNE , 81377 M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I2801533059"]},{"raw_affiliation_string":"Department of Genome Oriented Bioinformatics, Technical University Munich, Wissenschaftszentrum Weihenstephan, Freising, 85354","institution_ids":["https://openalex.org/I309496635"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025441654","display_name":"Stefanie M. Hauck","orcid":"https://orcid.org/0000-0002-1630-6827"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Stefanie M Hauck","raw_affiliation_strings":["Metabolomics and Proteomics Core (MPC), Helmholtz Zentrum M\u00fcnchen, German Research Center for Environmental Health (GmbH) , 80939 M\u00fcnchen, Germany"],"affiliations":[{"raw_affiliation_string":"Metabolomics and Proteomics Core (MPC), Helmholtz Zentrum M\u00fcnchen, German Research Center for Environmental Health (GmbH) , 80939 M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I3018134672"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5025441654"],"corresponding_institution_ids":["https://openalex.org/I3018134672"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3689,"currency":"EUR","value_usd":3978},"fwci":0.8836,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.68931356,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"39","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8835840225219727},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7939234972000122},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6767987012863159},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6519607901573181},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6343203783035278},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.5110474824905396},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.48076340556144714},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.44618716835975647},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4444107711315155},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.42064863443374634},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.41622138023376465},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3538714051246643},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33598268032073975},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2868410646915436},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21166208386421204}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8835840225219727},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7939234972000122},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6767987012863159},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6519607901573181},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6343203783035278},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.5110474824905396},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.48076340556144714},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.44618716835975647},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4444107711315155},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.42064863443374634},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.41622138023376465},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3538714051246643},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33598268032073975},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2868410646915436},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21166208386421204}],"mesh":[{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btad358","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad358","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad358/50513444/btad358.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37267150","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37267150","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pub.dzne.de:258672","is_oa":true,"landing_page_url":"https://pub.dzne.de/record/258672","pdf_url":"https://pub.dzne.de/record/258672/files/DZNE-2023-00645.pdf","source":{"id":"https://openalex.org/S7407051172","display_name":"DZNE Pub","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 39(6), btad358 (2023). doi:10.1093/bioinformatics/btad358","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10265443","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10265443","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10265443/pdf/btad358.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:push-zb.helmholtz-munich.de:67858","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67858","pdf_url":null,"source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 39:3 (2023)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad358","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad358","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad358/50513444/btad358.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4379115109.pdf"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1973012451","https://openalex.org/W2062859898","https://openalex.org/W2080752012","https://openalex.org/W2114165700","https://openalex.org/W2991106430","https://openalex.org/W3083984300","https://openalex.org/W4206426302","https://openalex.org/W4210547217","https://openalex.org/W6806808904","https://openalex.org/W6944020624","https://openalex.org/W6962836517"],"related_works":["https://openalex.org/W3080200277","https://openalex.org/W4389426664","https://openalex.org/W2566205467","https://openalex.org/W3012616639","https://openalex.org/W3126000805","https://openalex.org/W2010064959","https://openalex.org/W2119742499","https://openalex.org/W1985266044","https://openalex.org/W4391117154","https://openalex.org/W4220940831"],"abstract_inverted_index":{"mpwR":[0],"is":[1,24,37],"available":[2],"as":[3],"an":[4],"open-source":[5],"R":[6],"package.":[7],"Release":[8],"versions":[9],"can":[10],"be":[11],"accessed":[12],"on":[13,26],"CRAN":[14],"(https://CRAN.R-project.org/package=mpwR)":[15],"for":[16],"all":[17],"major":[18],"operating":[19],"systems.":[20],"The":[21],"development":[22],"version":[23],"maintained":[25],"GitHub":[27],"(https://github.com/okdll/mpwR)":[28],"and":[29,34],"full":[30],"documentation":[31],"with":[32],"examples":[33],"workflow":[35],"templates":[36],"provided":[38],"via":[39],"the":[40],"package":[41],"website":[42],"(https://okdll.github.io/mpwR/).":[43]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}