{"id":"https://openalex.org/W4378952539","doi":"https://doi.org/10.1093/bioinformatics/btad349","title":"Cellenium\u2014a scalable and interactive visual analytics app for exploring multimodal single-cell data","display_name":"Cellenium\u2014a scalable and interactive visual analytics app for exploring multimodal single-cell data","publication_year":2023,"publication_date":"2023-05-31","ids":{"openalex":"https://openalex.org/W4378952539","doi":"https://doi.org/10.1093/bioinformatics/btad349","pmid":"https://pubmed.ncbi.nlm.nih.gov/37261846"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad349","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad349","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad349/50502976/btad349.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad349/50502976/btad349.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014355134","display_name":"Carsten Jahn","orcid":null},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Carsten Jahn","raw_affiliation_strings":["Scientific Solutions, Bayer AG , Berlin 13353, Germany","Scientific Solutions, Bayer AG, Berlin, 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Solutions, Bayer AG , Berlin 13353, Germany","institution_ids":["https://openalex.org/I67348948"]},{"raw_affiliation_string":"Scientific Solutions, Bayer AG, Berlin, 13353, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089817227","display_name":"Mahmoud M. Ibrahim","orcid":"https://orcid.org/0000-0001-6954-5314"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mahmoud Ibrahim","raw_affiliation_strings":["Biomedical Data Science, Bayer AG , Wuppertal 42113, Germany"],"affiliations":[{"raw_affiliation_string":"Biomedical Data Science, Bayer AG , Wuppertal 42113, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111504216","display_name":"J. Busch","orcid":null},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jannis Busch","raw_affiliation_strings":["Scientific Solutions, Bayer AG , Berlin 13353, Germany","Scientific Solutions, Bayer AG, Berlin, 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Solutions, Bayer AG , Berlin 13353, Germany","institution_ids":["https://openalex.org/I67348948"]},{"raw_affiliation_string":"Scientific Solutions, Bayer AG, Berlin, 13353, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101852581","display_name":"Qiong Lin","orcid":"https://orcid.org/0000-0002-4393-2495"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Qiong Lin","raw_affiliation_strings":["Scientific Solutions, Bayer AG , Berlin 13353, Germany","Scientific Solutions, Bayer AG, Berlin, 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Solutions, Bayer AG , Berlin 13353, Germany","institution_ids":["https://openalex.org/I67348948"]},{"raw_affiliation_string":"Scientific Solutions, Bayer AG, Berlin, 13353, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014966805","display_name":"Himanshu Manchanda","orcid":"https://orcid.org/0000-0002-3882-7439"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Himanshu Manchanda","raw_affiliation_strings":["Biomedical Data Science I, Bayer AG , Berlin 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Biomedical Data Science I, Bayer AG , Berlin 13353, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092062218","display_name":"Hagen Mohr","orcid":null},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hagen Mohr","raw_affiliation_strings":["Scientific Solutions, Bayer AG , Berlin 13353, Germany","Scientific Solutions, Bayer AG, Berlin, 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Solutions, Bayer AG , Berlin 13353, Germany","institution_ids":["https://openalex.org/I67348948"]},{"raw_affiliation_string":"Scientific Solutions, Bayer AG, Berlin, 13353, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092062219","display_name":"Dan Plischke","orcid":null},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dan Plischke","raw_affiliation_strings":["Scientific Solutions, Bayer AG , Berlin 13353, Germany","Scientific Solutions, Bayer AG, Berlin, 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Solutions, Bayer AG , Berlin 13353, Germany","institution_ids":["https://openalex.org/I67348948"]},{"raw_affiliation_string":"Scientific Solutions, Bayer AG, Berlin, 13353, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047866999","display_name":"Helge G. Roider","orcid":"https://orcid.org/0000-0002-4614-5219"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Helge G Roider","raw_affiliation_strings":["Biomedical Data Science I, Bayer AG , Berlin 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Biomedical Data Science I, Bayer AG , Berlin 13353, Germany","institution_ids":["https://openalex.org/I67348948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102932992","display_name":"Andreas Steffen","orcid":"https://orcid.org/0009-0009-8113-0010"},"institutions":[{"id":"https://openalex.org/I67348948","display_name":"Bayer (Germany)","ror":"https://ror.org/04hmn8g73","country_code":"DE","type":"company","lineage":["https://openalex.org/I67348948"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Andreas Steffen","raw_affiliation_strings":["Scientific Solutions, Bayer AG , Berlin 13353, Germany","Scientific Solutions, Bayer AG, Berlin, 13353, Germany"],"affiliations":[{"raw_affiliation_string":"Scientific Solutions, Bayer AG , Berlin 13353, Germany","institution_ids":["https://openalex.org/I67348948"]},{"raw_affiliation_string":"Scientific Solutions, Bayer AG, Berlin, 13353, Germany","institution_ids":["https://openalex.org/I67348948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5102932992"],"corresponding_institution_ids":["https://openalex.org/I67348948"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.24541146,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"39","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9588000178337097,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8312411308288574},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7275021076202393},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.667386531829834},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6098688840866089},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5543326139450073},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5480879545211792},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.52955561876297},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5239008665084839},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.48424527049064636},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.4419049024581909},{"id":"https://openalex.org/keywords/dialog-box","display_name":"Dialog box","score":0.4178309142589569},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.40102308988571167},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.3657084107398987},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2680824398994446},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2526967525482178},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.17951887845993042},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1250952184200287}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8312411308288574},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7275021076202393},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.667386531829834},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6098688840866089},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5543326139450073},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5480879545211792},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.52955561876297},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5239008665084839},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.48424527049064636},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.4419049024581909},{"id":"https://openalex.org/C173853756","wikidata":"https://www.wikidata.org/wiki/Q86915","display_name":"Dialog box","level":2,"score":0.4178309142589569},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.40102308988571167},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.3657084107398987},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2680824398994446},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2526967525482178},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.17951887845993042},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1250952184200287}],"mesh":[{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad349","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad349","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad349/50502976/btad349.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37261846","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37261846","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10257576","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10257576","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10257576/pdf/btad349.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad349","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad349","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad349/50502976/btad349.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7799999713897705,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320307771","display_name":"Bayer","ror":"https://ror.org/04hmn8g73"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4378952539.pdf"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2516678343","https://openalex.org/W2800392236","https://openalex.org/W3113049731","https://openalex.org/W3164692211","https://openalex.org/W3209238322","https://openalex.org/W4210607772"],"related_works":["https://openalex.org/W4309247532","https://openalex.org/W4386463918","https://openalex.org/W2766482558","https://openalex.org/W4280590238","https://openalex.org/W4385413248","https://openalex.org/W2796515132","https://openalex.org/W2890349324","https://openalex.org/W4317779747","https://openalex.org/W4311197830","https://openalex.org/W2020328473"],"abstract_inverted_index":{"Source":[0],"code":[1],"and":[2,11,26,35,38,46,52,56],"documentation":[3],"are":[4,12,40],"freely":[5],"available":[6,13],"under":[7],"an":[8],"MIT":[9],"license":[10],"on":[14,58],"GitHub":[15],"(https://github.com/Bayer-Group/cellenium).":[16],"The":[17,48],"server":[18],"backend":[19],"is":[20,30,50],"implemented":[21],"in":[22,32],"PostgreSQL,":[23],"Python":[24],"3,":[25],"GraphQL,":[27],"the":[28],"frontend":[29],"written":[31],"ReactJS,":[33],"TypeScript,":[34],"Mantine":[36],"css,":[37],"plots":[39],"generated":[41],"using":[42],"plotlyjs,":[43],"seaborn,":[44],"vega-lite,":[45],"nivo.rocks.":[47],"application":[49],"dockerized":[51],"can":[53],"be":[54],"deployed":[55],"orchestrated":[57],"a":[59],"standard":[60],"workstation":[61],"via":[62],"docker-compose.":[63]},"counts_by_year":[],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}