{"id":"https://openalex.org/W4377691294","doi":"https://doi.org/10.1093/bioinformatics/btad336","title":"Multi-modal deep learning improves grain yield prediction in wheat breeding by fusing genomics and phenomics","display_name":"Multi-modal deep learning improves grain yield prediction in wheat breeding by fusing genomics and phenomics","publication_year":2023,"publication_date":"2023-05-23","ids":{"openalex":"https://openalex.org/W4377691294","doi":"https://doi.org/10.1093/bioinformatics/btad336","pmid":"https://pubmed.ncbi.nlm.nih.gov/37220903"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad336","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad336","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad336/50425556/btad336.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad336/50425556/btad336.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056648635","display_name":"Matteo Togninalli","orcid":"https://orcid.org/0000-0001-6554-2167"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Matteo Togninalli","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Basel, Switzerland","Swiss Institute of Bioinformatics , Lausanne, Switzerland","Visium , Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Visium , Lausanne, Switzerland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031454609","display_name":"Xu Wang","orcid":"https://orcid.org/0000-0002-7144-6865"},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]},{"id":"https://openalex.org/I83683471","display_name":"University of West Florida","ror":"https://ror.org/002w4zy91","country_code":"US","type":"education","lineage":["https://openalex.org/I83683471"]},{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xu Wang","raw_affiliation_strings":["Department of Agricultural and Biological Engineering, IFAS Gulf Coast Research and Education Center, University of Florida , Wimauma, FL, United States","Department of Plant Pathology, Kansas State University , Manhattan, KS, United States"],"affiliations":[{"raw_affiliation_string":"Department of Agricultural and Biological Engineering, IFAS Gulf Coast Research and Education Center, University of Florida , Wimauma, FL, United States","institution_ids":["https://openalex.org/I83683471","https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Plant Pathology, Kansas State University , Manhattan, KS, United States","institution_ids":["https://openalex.org/I189590672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027015430","display_name":"Tim Kucera","orcid":"https://orcid.org/0000-0003-4358-7932"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"Tim Kucera","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Basel, Switzerland","Department of Machine Learning and Systems Biology, Max Planck Institute of Biochemistry , Martinsried, Germany","Swiss Institute of Bioinformatics , Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Department of Machine Learning and Systems Biology, Max Planck Institute of Biochemistry , Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051168413","display_name":"Sandesh Shrestha","orcid":"https://orcid.org/0000-0001-5527-8999"},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sandesh Shrestha","raw_affiliation_strings":["Department of Plant Pathology, Kansas State University , Manhattan, KS, United States"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Kansas State University , Manhattan, KS, United States","institution_ids":["https://openalex.org/I189590672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056099281","display_name":"Philomin Juliana","orcid":"https://orcid.org/0000-0001-6922-0173"},"institutions":[{"id":"https://openalex.org/I21740220","display_name":"Centro Internacional de Mejoramiento de Ma\u00edz Y Trigo","ror":"https://ror.org/03gvhpa76","country_code":"MX","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I21740220"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Philomin Juliana","raw_affiliation_strings":["Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico"],"affiliations":[{"raw_affiliation_string":"Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico","institution_ids":["https://openalex.org/I21740220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009404553","display_name":"Suchismita Mondal","orcid":"https://orcid.org/0000-0002-8582-8899"},"institutions":[{"id":"https://openalex.org/I21740220","display_name":"Centro Internacional de Mejoramiento de Ma\u00edz Y Trigo","ror":"https://ror.org/03gvhpa76","country_code":"MX","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I21740220"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Suchismita Mondal","raw_affiliation_strings":["Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico"],"affiliations":[{"raw_affiliation_string":"Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico","institution_ids":["https://openalex.org/I21740220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045778806","display_name":"Francisco Pinto","orcid":"https://orcid.org/0000-0003-3000-9084"},"institutions":[{"id":"https://openalex.org/I21740220","display_name":"Centro Internacional de Mejoramiento de Ma\u00edz Y Trigo","ror":"https://ror.org/03gvhpa76","country_code":"MX","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I21740220"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Francisco Pinto","raw_affiliation_strings":["Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico"],"affiliations":[{"raw_affiliation_string":"Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico","institution_ids":["https://openalex.org/I21740220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086055222","display_name":"Velu Govindan","orcid":"https://orcid.org/0000-0001-9502-4352"},"institutions":[{"id":"https://openalex.org/I21740220","display_name":"Centro Internacional de Mejoramiento de Ma\u00edz Y Trigo","ror":"https://ror.org/03gvhpa76","country_code":"MX","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I21740220"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Velu Govindan","raw_affiliation_strings":["Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico"],"affiliations":[{"raw_affiliation_string":"Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico","institution_ids":["https://openalex.org/I21740220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032289984","display_name":"Leonardo Crespo\u2010Herrera","orcid":"https://orcid.org/0000-0003-0506-4700"},"institutions":[{"id":"https://openalex.org/I21740220","display_name":"Centro Internacional de Mejoramiento de Ma\u00edz Y Trigo","ror":"https://ror.org/03gvhpa76","country_code":"MX","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I21740220"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Leonardo Crespo-Herrera","raw_affiliation_strings":["Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico"],"affiliations":[{"raw_affiliation_string":"Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico","institution_ids":["https://openalex.org/I21740220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003947009","display_name":"Julio Huerta\u2010Espino","orcid":"https://orcid.org/0000-0001-8334-9862"},"institutions":[{"id":"https://openalex.org/I4210086193","display_name":"Instituto Nacional de Investigaciones Forestales Agr\u00edcolas y Pecuarias","ror":"https://ror.org/00r6gdp61","country_code":"MX","type":"facility","lineage":["https://openalex.org/I4210086193"]},{"id":"https://openalex.org/I21740220","display_name":"Centro Internacional de Mejoramiento de Ma\u00edz Y Trigo","ror":"https://ror.org/03gvhpa76","country_code":"MX","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I21740220"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Julio Huerta-Espino","raw_affiliation_strings":["Campo Experimental Valle de Mexico-INIFAP , Texcoco, Estado de Mexico, Mexico","Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico"],"affiliations":[{"raw_affiliation_string":"Campo Experimental Valle de Mexico-INIFAP , Texcoco, Estado de Mexico, Mexico","institution_ids":["https://openalex.org/I4210086193"]},{"raw_affiliation_string":"Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico","institution_ids":["https://openalex.org/I21740220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059664632","display_name":"Ravi P. Singh","orcid":"https://orcid.org/0000-0002-4676-5071"},"institutions":[{"id":"https://openalex.org/I21740220","display_name":"Centro Internacional de Mejoramiento de Ma\u00edz Y Trigo","ror":"https://ror.org/03gvhpa76","country_code":"MX","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I21740220"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Ravi P Singh","raw_affiliation_strings":["Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico"],"affiliations":[{"raw_affiliation_string":"Global Wheat Program, International Maize and Wheat Improvement Center , Texcoco, Estado de Mexico, Mexico","institution_ids":["https://openalex.org/I21740220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074540538","display_name":"Karsten Borgwardt","orcid":"https://orcid.org/0000-0001-7221-2393"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["CH","DE"],"is_corresponding":true,"raw_author_name":"Karsten Borgwardt","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich , Basel, Switzerland","Department of Machine Learning and Systems Biology, Max Planck Institute of Biochemistry , Martinsried, Germany","Swiss Institute of Bioinformatics , Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich , Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Department of Machine Learning and Systems Biology, Max Planck Institute of Biochemistry , Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061266478","display_name":"Jesse Poland","orcid":"https://orcid.org/0000-0002-7856-1399"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]},{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["SA","US"],"is_corresponding":true,"raw_author_name":"Jesse Poland","raw_affiliation_strings":["Center for Desert Agriculture, King Abdullah University of Science and Technology , Thuwal, Saudi Arabia","Department of Plant Pathology, Kansas State University , Manhattan, KS, United States"],"affiliations":[{"raw_affiliation_string":"Center for Desert Agriculture, King Abdullah University of Science and Technology , Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Department of Plant Pathology, Kansas State University , Manhattan, KS, United States","institution_ids":["https://openalex.org/I189590672"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5056648635","https://openalex.org/A5061266478","https://openalex.org/A5074540538"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I189590672","https://openalex.org/I35440088","https://openalex.org/I4210150093","https://openalex.org/I71920554"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":11.5292,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.98250421,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"39","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10616","display_name":"Smart Agriculture and AI","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phenomics","display_name":"Phenomics","score":0.9096472859382629},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.7166016697883606},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6745200753211975},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6638932824134827},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6629181504249573},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6333752870559692},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.4836364984512329},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.46800461411476135},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.42774054408073425},{"id":"https://openalex.org/keywords/breeding-program","display_name":"Breeding program","score":0.4204975664615631},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.332824170589447},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.30145180225372314},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1430838406085968},{"id":"https://openalex.org/keywords/agronomy","display_name":"Agronomy","score":0.1263936460018158},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.09386080503463745}],"concepts":[{"id":"https://openalex.org/C98108635","wikidata":"https://www.wikidata.org/wiki/Q6497275","display_name":"Phenomics","level":5,"score":0.9096472859382629},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.7166016697883606},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6745200753211975},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6638932824134827},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6629181504249573},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6333752870559692},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.4836364984512329},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.46800461411476135},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.42774054408073425},{"id":"https://openalex.org/C104959735","wikidata":"https://www.wikidata.org/wiki/Q4960291","display_name":"Breeding program","level":3,"score":0.4204975664615631},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.332824170589447},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.30145180225372314},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1430838406085968},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.1263936460018158},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.09386080503463745},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C197321923","wikidata":"https://www.wikidata.org/wiki/Q4886","display_name":"Cultivar","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080444","descriptor_name":"Phenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080444","descriptor_name":"Phenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080444","descriptor_name":"Phenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002523","descriptor_name":"Edible Grain","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002523","descriptor_name":"Edible Grain","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002523","descriptor_name":"Edible Grain","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btad336","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad336","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad336/50425556/btad336.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37220903","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37220903","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10246581","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10246581","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10246581/pdf/btad336.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/692037","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/692037","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/618851","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/618851","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 39 (6)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.3929/ethz-b-000618851","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000618851","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad336","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad336","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad336/50425556/btad336.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.7200000286102295,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G542491859","display_name":null,"funder_award_id":"1238187","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306115","display_name":"United States Agency for International Development","ror":"https://ror.org/01n6e6j62"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4377691294.pdf"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1987473568","https://openalex.org/W1990813498","https://openalex.org/W1998943389","https://openalex.org/W2025238960","https://openalex.org/W2059488281","https://openalex.org/W2063661977","https://openalex.org/W2101234009","https://openalex.org/W2112484080","https://openalex.org/W2117239669","https://openalex.org/W2124333771","https://openalex.org/W2200121095","https://openalex.org/W2467491686","https://openalex.org/W2555638636","https://openalex.org/W2603228623","https://openalex.org/W2760544538","https://openalex.org/W2789758093","https://openalex.org/W2888549875","https://openalex.org/W2913668833","https://openalex.org/W2927871781","https://openalex.org/W2945720445","https://openalex.org/W2951831261","https://openalex.org/W2956708805","https://openalex.org/W2963721881","https://openalex.org/W2991004173","https://openalex.org/W2995831454","https://openalex.org/W2996041315","https://openalex.org/W2996092187","https://openalex.org/W3008695158","https://openalex.org/W3012909962","https://openalex.org/W3034067006","https://openalex.org/W3043908128","https://openalex.org/W3079760979","https://openalex.org/W3081278968","https://openalex.org/W3083699157","https://openalex.org/W3093704794","https://openalex.org/W3098019734","https://openalex.org/W3110648706","https://openalex.org/W3185352006","https://openalex.org/W4205467338","https://openalex.org/W4212774754","https://openalex.org/W6675354045","https://openalex.org/W6676839513","https://openalex.org/W6765657402","https://openalex.org/W6784618601"],"related_works":["https://openalex.org/W4249881829","https://openalex.org/W2953048636","https://openalex.org/W304886144","https://openalex.org/W4387031483","https://openalex.org/W2918339067","https://openalex.org/W2150403567","https://openalex.org/W2325942054","https://openalex.org/W4288220925","https://openalex.org/W2389242864","https://openalex.org/W4250803711"],"abstract_inverted_index":{"Available":[0],"at":[1],"https://github.com/BorgwardtLab/PheGeMIL":[2],"(code)":[3],"and":[4],"https://doi.org/doi:10.5061/dryad.kprr4xh5p":[5],"(data).":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":10}],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
