{"id":"https://openalex.org/W4382631739","doi":"https://doi.org/10.1093/bioinformatics/btad319","title":"ISMB/ECCB 2023 proceedings","display_name":"ISMB/ECCB 2023 proceedings","publication_year":2023,"publication_date":"2023-06-01","ids":{"openalex":"https://openalex.org/W4382631739","doi":"https://doi.org/10.1093/bioinformatics/btad319","pmid":"https://pubmed.ncbi.nlm.nih.gov/37387153"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad319","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i1/50741543/btad319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i1/50741543/btad319.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076325273","display_name":"Yann Ponty","orcid":"https://orcid.org/0000-0002-7615-3930"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210139461","display_name":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique","ror":"https://ror.org/04afed728","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210139461","https://openalex.org/I4210145102","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Yann Ponty","raw_affiliation_strings":["Laboratoire d'Informatique de l'Ecole Polytechnique (CNRS UMR 7161) , Institut Polytechnique de Paris , Palaiseau 91160, France"],"raw_orcid":"https://orcid.org/0000-0002-7615-3930","affiliations":[{"raw_affiliation_string":"Laboratoire d'Informatique de l'Ecole Polytechnique (CNRS UMR 7161) , Institut Polytechnique de Paris , Palaiseau 91160, France","institution_ids":["https://openalex.org/I4210139461","https://openalex.org/I142476485","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082616445","display_name":"Sushmita Roy","orcid":"https://orcid.org/0000-0002-3694-1705"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I2802999273","display_name":"Wisconsin Institutes for Discovery","ror":"https://ror.org/05gbven85","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802999273"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sushmita Roy","raw_affiliation_strings":["Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison , Madison, WI 53792, United States","Wisconsin Institute for Discovery, University of Wisconsin-Madison , Madison, WI 53715, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison , Madison, WI 53792, United States","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Wisconsin Institute for Discovery, University of Wisconsin-Madison , Madison, WI 53715, United States","institution_ids":["https://openalex.org/I2802999273","https://openalex.org/I135310074"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5076325273","https://openalex.org/A5082616445"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I135310074","https://openalex.org/I142476485","https://openalex.org/I2802999273","https://openalex.org/I4210139461"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1815,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.80547713,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"39","issue":"Supplement_1","first_page":"i1","last_page":"i2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12829","display_name":"Advanced Breast Cancer Therapies","score":0.007300000172108412,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12829","display_name":"Advanced Breast Cancer Therapies","score":0.007300000172108412,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13370","display_name":"Diverse Scientific and Economic Studies","score":0.005799999926239252,"subfield":{"id":"https://openalex.org/subfields/2002","display_name":"Economics and Econometrics"},"field":{"id":"https://openalex.org/fields/20","display_name":"Economics, Econometrics and Finance"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13607","display_name":"Academic Publishing and Open Access","score":0.005799999926239252,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6208093166351318}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6208093166351318}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad319","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i1/50741543/btad319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37387153","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37387153","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10311323","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10311323","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10311323/pdf/btad319.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-04146834v1","is_oa":false,"landing_page_url":"https://hal.science/hal-04146834","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 39 (Supplement_1), pp.i1-i2, 2023, &#x27E8;10.1093/bioinformatics/btad319&#x27E9;","raw_type":"Proceedings"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad319","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i1/50741543/btad319.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4382631739.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"This":[0,31,619],"special":[1,243,771],"issue":[2],"of":[3,9,76,93,163,177,195,211,225,235,269,277,293,298,310,338,352,375,379,383,387,403,464,467,505,542,544,591,616,636,675,694,718,722,748,794,797],"Bioinformatics":[4],"serves":[5],"as":[6,113,509,511,531,533,555],"the":[7,10,23,44,67,73,77,90,94,104,107,123,126,167,170,203,220,285,291,296,302,311,316,323,339,347,353,359,369,373,393,404,410,413,417,421,429,441,452,456,540,564,567,581,589,592,598,634,637,644,673,688,691,695,699,716,719,723,745,749,762,778,791,795,799,808,840,857,871,889],"proceedings":[8,280,772,785],"31st":[11],"annual":[12],"conference":[13,32,75,394,645,846],"on":[14,27,35,158,251,372,584,672,831],"Intelligent":[15],"Systems":[16],"for":[17,48,80,160,189,223,249,255,288,305,357,573,643,657,702,735,753,768,780,851],"Molecular":[18],"Biology":[19,29,82,246],"(ISMB)":[20],"co-organized":[21],"with":[22,86,117,152,392,440,451,493,551],"22nd":[24],"European":[25],"Conference":[26],"Computational":[28,81,245],"(ECCB).":[30],"took":[33],"place":[34],"23\u201327":[36],"July":[37],"2023,":[38],"in":[39,66,132,263,334,449,580,648,662,706],"Lyon,":[40],"France.":[41],"ISMB":[42,71,271,348,750],"is":[43,72,89,714,811],"leading":[45,61],"international":[46],"forum":[47,222],"presenting":[49],"new":[50],"research":[51,186,229],"results,":[52],"disseminating":[53],"methods":[54],"and":[55,57,64,185,239,301,329,366,401,419,432,438,515,578,627,678,698,709,732,739,743,757,814,844,856,894],"techniques,":[56],"facilitating":[58],"discussions":[59],"among":[60],"researchers,":[62],"practitioners,":[63],"students":[65],"field.":[68],"In":[69,197,594],"addition,":[70],"flagship":[74],"International":[78],"Society":[79],"(ISCB).":[83],"Joining":[84],"forces":[85],"ECCB,":[87],"ISMB/ECCB2023":[88],"largest":[91],"event":[92],"computational":[95,376],"biology":[96],"community.":[97],"Due":[98],"to":[99,103,175,182,192,199,415,474,480,488,491,563,601,604,630,669,687,837,861,863],"ongoing":[100],"issues":[101],"related":[102],"COVID-19":[105],"pandemic,":[106],"ISMB/ECCB":[108,278,576,859],"2023":[109,272,279,577],"meeting":[110,854],"was":[111,313,485,507,868,879],"run":[112],"a":[114,161,208,232,242,461,481,494,595,649],"hybrid":[115],"conference,":[116],"online":[118],"participants":[119],"from":[120,137,560],"all":[121,621,744,777,798,826,839,845,850],"around":[122],"world":[124],"complementing":[125],"on-site":[127],"participants.":[128,847],"The":[129,146,228,282,308,423,503,654],"papers":[130,148,370,418,490,562,624,666],"published":[131],"this":[133,770,853],"volume":[134],"were":[135,149,173,341,355,436,447,478,571,625,640,667],"selected":[136],"336":[138,568],"submitted":[139,147,171],"full":[140],"length":[141],"papers,":[142,295,300],"featuring":[143],"original":[144],"research.":[145],"thoroughly":[150],"reviewed":[151,294],"each":[153,289,306],"paper":[154],"receiving":[155],"4.04":[156],"reviews":[157,435],"average,":[159],"total":[162],"1358":[164],"reports.":[165],"For":[166],"review":[168,430],"purpose,":[169],"manuscripts":[172,257],"assigned":[174,668],"one":[176],"11":[178],"scientific":[179,720,792],"areas":[180,230,276],"according":[181],"authors\u2019":[183],"preference":[184],"topic,":[187],"allowing":[188],"minor":[190],"adjustments":[191],"avoid":[193],"conflicts":[194,466,536],"interest.":[196,468],"addition":[198],"selecting":[200],"an":[201,475],"area,":[202],"authors":[204,599,677,779,827],"could":[205,538,548],"also":[206,240,726,760],"designate":[207],"particular":[209],"Community":[210],"Special":[212],"Interest":[213],"(COSI;":[214],"Table":[215,335,663],"1)":[216],"that":[217,258,470,537,547,825],"would":[218,786],"provide":[219],"best":[221,806],"presentation":[224,574],"their":[226,408,606,610,617,703,736,754,782,832],"paper.":[227],"covered":[231],"broad":[233],"spectrum":[234],"topics":[236,253],"(Table":[237,681],"2)":[238],"included":[241,322],"General":[244],"area":[247],"intended":[248],"submissions":[250,312],"emerging":[252],"or":[254,345,500,546,612],"those":[256],"did":[259],"not":[260,487,787],"fit":[261],"well":[262,532],"other":[264,746],"reviewing":[265,309,457],"areas.":[266],"COSI":[267,679],"distribution":[268],"accepted":[270,299,572,623,642],"Proceedings":[273,324,556],"papers.":[274,800],"Thematic":[275],"talks.":[281],"table":[283],"lists":[284],"Area":[286,330,476,689],"Chairs":[287,325,331],"theme,":[290],"number":[292,297],"acceptance":[303,445,651,655],"rate":[304,652],"area.":[307,483],"overseen":[314],"by":[315,343,346,870,881],"Senior":[317],"Program":[318,360,696],"Committee":[319,364,697,752],"(SPC),":[320],"which":[321],"(this":[326],"editorial\u2019s":[327],"authors)":[328],"(AC,":[332],"listed":[333],"2).":[336],"Several":[337],"ACs":[340,424],"nominated":[342],"COSIs":[344,670],"Steering":[349,751],"Committee.":[350,361],"Members":[351,365],"SPC":[354],"responsible":[356],"recruiting":[358],"Reviewers":[362],"(Program":[363],"subreviewers)":[367],"judged":[368,629],"based":[371,671],"novelty":[374],"approaches,":[377],"relevance":[378],"biological":[380,384],"questions,":[381],"importance":[382],"insights,":[385],"clarity":[386],"presentations,":[388],"expected":[389],"impact,":[390],"compatibility":[391],"format":[395],"and,":[396],"most":[397],"importantly,":[398],"correctness,":[399],"completeness,":[400],"reproducibility":[402],"studies.":[405],"After":[406],"submitting":[407,561,781],"reviews,":[409],"reviewers":[411,492],"had":[412,471,600],"opportunity":[414],"discuss":[416],"refine":[420],"scores.":[422],"facilitated":[425],"these":[426],"discussions,":[427],"oversaw":[428],"process":[431,810],"made":[433,448],"sure":[434],"detailed":[437],"consistent":[439],"overall":[442],"decision.":[443],"Final":[444],"decisions":[446],"agreement":[450],"entire":[453,858],"SPC.":[454],"Throughout":[455],"process,":[458],"we":[459,558,823,835],"followed":[460],"stringent":[462],"policy":[463],"guarding":[465],"Submissions":[469],"any":[472,534],"association":[473],"Chair":[477],"reassigned":[479],"different":[482],"Care":[484],"taken":[486],"assign":[489],"perceived":[495],"conflict":[496,506,543],"either":[497],"(e.g.":[498],"co-authorship":[499],"same":[501,519],"institution).":[502],"definition":[504],"defined":[508],"broadly":[510],"possible\u2014including":[512],"collaborators":[513],"(present":[514],"past":[516,522],"few":[517,523,596],"years),":[518],"institution":[520],"(present,":[521],"years,":[524],"planned":[525],"future":[526],"moves),":[527],"family":[528],"relations,":[529],"advisees/advisors,":[530],"personal":[535],"cause":[539],"appearance":[541],"interest,":[545],"genuinely":[549],"interfere":[550],"objective":[552],"reviewing.":[553],"Finally,":[554,834],"Chairs,":[557,690],"refrained":[559],"conference.":[565,724],"Among":[566],"submissions,":[569],"60":[570],"at":[575,715,764],"publication":[579],"proceedings,":[582,646],"conditioned":[583],"revisions":[585],"having":[586],"properly":[587,632],"addressed":[588,633],"comments":[590],"reviewers.":[593,638],"cases,":[597],"be":[602,788],"reminded":[603],"release":[605],"source":[607],"code":[608],"alongside":[609],"manuscript,":[611],"clarify":[613],"some":[614,815],"aspects":[615],"evaluations.":[618],"year,":[620],"conditionally":[622],"revised":[626],"subsequently":[628,641],"have":[631,819],"concerns":[635],"They":[639],"resulting":[647],"17.9%":[650],"overall.":[653],"rates":[656],"individual":[658],"Areas":[659],"are":[660,684],"shown":[661],"2.":[664],"Accepted":[665],"preferences":[674],"both":[676],"organizers":[680],"1).":[682],"We":[683,725,759,774,801],"deeply":[685],"grateful":[686],"317":[692],"members":[693,747],"368":[700],"subreviewers":[701],"outstanding":[704,816],"efforts":[705],"conducting":[707],"thorough":[708],"timely":[710],"reviews.":[711],"Their":[712],"contribution":[713],"core":[717],"quality":[721],"thank":[727,761,776,838],"Steven":[728],"Leard,":[729],"Diane":[730],"Kovats,":[731],"Seth":[733],"Munholland":[734],"support,":[737],"guidance,":[738],"handling":[740],"logistical":[741],"questions":[742],"expert":[755],"advise":[756],"supervision.":[758],"team":[763],"Oxford":[765],"University":[766],"Press":[767],"producing":[769],"volume.":[773],"finally":[775],"work.":[783,833],"These":[784],"possible":[789,855],"without":[790],"ingenuity":[793],"contributors":[796],"recognize":[802],"that,":[803],"despite":[804],"our":[805],"efforts,":[807],"selection":[809],"necessarily":[812],"imperfect,":[813],"work":[817],"will":[818],"been":[820],"missed.":[821],"Nonetheless,":[822],"hope":[824],"received":[828],"helpful":[829],"feedback":[830],"want":[836],"keynote":[841],"speakers,":[842],"presenters,":[843],"Thank":[848],"you":[849],"making":[852],"community":[860],"continue":[862],"thrive.":[864],"None":[865],"declared.":[866],"S.R.":[867],"supported":[869,880],"James":[872],"McDonnell":[873],"Foundation":[874],"Scholar":[875],"award":[876],"(220020473).":[877],"Y.P.":[878],"French":[882],"Agence":[883],"Nationale":[884],"de":[885],"la":[886],"Recherche":[887],"through":[888],"Decrypted":[890],"(ANR-19-CE30-0021),":[891],"PaRNAssus":[892],"(ANR-19-CE45-0023),":[893],"INSSANE":[895],"(ANR-21-CE45-0034)":[896],"grants.":[897]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
