{"id":"https://openalex.org/W4375860907","doi":"https://doi.org/10.1093/bioinformatics/btad303","title":"GTExVisualizer: a web platform for supporting ageing studies","display_name":"GTExVisualizer: a web platform for supporting ageing studies","publication_year":2023,"publication_date":"2023-05-01","ids":{"openalex":"https://openalex.org/W4375860907","doi":"https://doi.org/10.1093/bioinformatics/btad303","pmid":"https://pubmed.ncbi.nlm.nih.gov/37154702"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad303","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad303/50244573/btad303.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad303/50244573/btad303.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037399554","display_name":"Pietro Hiram Guzzi","orcid":"https://orcid.org/0000-0001-5542-2997"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Pietro Hiram Guzzi","raw_affiliation_strings":["Data Analytics Research Center, University of Catanzaro , Catanzaro, Italy","Department of Surgical and Medical Sciences, Magna Graecia University of Catanzaro, Viale Europa , Catanzaro 88100, Italy"],"raw_orcid":"https://orcid.org/0000-0001-5542-2997","affiliations":[{"raw_affiliation_string":"Data Analytics Research Center, University of Catanzaro , Catanzaro, Italy","institution_ids":["https://openalex.org/I36443711"]},{"raw_affiliation_string":"Department of Surgical and Medical Sciences, Magna Graecia University of Catanzaro, Viale Europa , Catanzaro 88100, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059223728","display_name":"Ugo Lomoio","orcid":"https://orcid.org/0000-0001-8150-0039"},"institutions":[{"id":"https://openalex.org/I36443711","display_name":"Magna Graecia University","ror":"https://ror.org/0530bdk91","country_code":"IT","type":"education","lineage":["https://openalex.org/I36443711"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ugo Lomoio","raw_affiliation_strings":["Department of Surgical and Medical Sciences, Magna Graecia University of Catanzaro, Viale Europa , Catanzaro 88100, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgical and Medical Sciences, Magna Graecia University of Catanzaro, Viale Europa , Catanzaro 88100, Italy","institution_ids":["https://openalex.org/I36443711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027369094","display_name":"Pierangelo Veltri","orcid":"https://orcid.org/0000-0003-2494-0294"},"institutions":[{"id":"https://openalex.org/I45204951","display_name":"University of Calabria","ror":"https://ror.org/02rc97e94","country_code":"IT","type":"education","lineage":["https://openalex.org/I45204951"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pierangelo Veltri","raw_affiliation_strings":["DIMES, University of Calabria , Via Pietro Bucci , Rende, Italy"],"raw_orcid":"https://orcid.org/0000-0003-2494-0294","affiliations":[{"raw_affiliation_string":"DIMES, University of Calabria , Via Pietro Bucci , Rende, Italy","institution_ids":["https://openalex.org/I45204951"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5037399554"],"corresponding_institution_ids":["https://openalex.org/I36443711"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.1527,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.87422611,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"39","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.37450000643730164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.37450000643730164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.1446000039577484,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.049800001084804535,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7742118239402771},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.48067936301231384},{"id":"https://openalex.org/keywords/novelty","display_name":"Novelty","score":0.45336323976516724},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.42713838815689087},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3785219192504883},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3311748802661896},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0827840268611908}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7742118239402771},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.48067936301231384},{"id":"https://openalex.org/C2778738651","wikidata":"https://www.wikidata.org/wiki/Q16546687","display_name":"Novelty","level":2,"score":0.45336323976516724},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.42713838815689087},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3785219192504883},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3311748802661896},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0827840268611908},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C27206212","wikidata":"https://www.wikidata.org/wiki/Q34178","display_name":"Theology","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad303","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad303/50244573/btad303.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37154702","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37154702","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10196670","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10196670","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10196670/pdf/btad303.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad303","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad303/50244573/btad303.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4375860907.pdf"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2018838463","https://openalex.org/W2415866521","https://openalex.org/W2592659532","https://openalex.org/W3107527779","https://openalex.org/W3186506153"],"related_works":["https://openalex.org/W2381242807","https://openalex.org/W3126131230","https://openalex.org/W2347541121","https://openalex.org/W2080951048","https://openalex.org/W4288804799","https://openalex.org/W3032237421","https://openalex.org/W2390346111","https://openalex.org/W3011883280","https://openalex.org/W2369082698","https://openalex.org/W2401808953"],"abstract_inverted_index":{"MOTIVATION:":[0],"Studying":[1],"ageing":[2,63,87],"effects":[3,64,203],"on":[4,112,204],"molecules":[5],"is":[6,37,211],"an":[7],"important":[8],"new":[9],"topic":[10],"for":[11,20,33,62,81,200],"life":[12],"science.":[13],"To":[14],"perform":[15],"such":[16,103],"studies,":[17,84],"the":[18,57,74,106,124,176],"need":[19,93],"data,":[21],"models,":[22],"algorithms,":[23],"and":[24,52,130,145,161,218],"tools":[25,80],"arises":[26],"to":[27,43,70,94,98,100,128,178],"elucidate":[28],"molecular":[29,205],"mechanisms.":[30],"GTEx":[31,132],"(standing":[32],"Genotype-Tissue":[34],"Expression)":[35],"portal":[36],"a":[38,90,109,126,137,198],"web-based":[39],"data":[40,47,60,72,219],"source":[41,216],"allowing":[42],"retrieve":[44],"patients'":[45],"transcriptomics":[46],"annotated":[48],"with":[49,158],"tissues,":[50],"gender,":[51],"age":[53,114],"information.":[54],"It":[55],"represents":[56],"more":[58],"complete":[59],"sources":[61],"studies.":[65,88],"Nevertheless,":[66],"it":[67,174],"lacks":[68],"functionalities":[69],"query":[71,96,129,147],"at":[73],"sex/age":[75,153,189],"level,":[76],"as":[77,79,104,165,168,170],"well":[78,169],"protein":[82],"interaction":[83],"thereby":[85],"limiting":[86],"As":[89],"result,":[91],"users":[92],"download":[95],"results":[97,164],"proceed":[99],"further":[101],"analysis,":[102],"retrieving":[105],"expression":[107,154,187],"of":[108],"given":[110],"gene":[111,186],"different":[113],"(or":[115],"sex)":[116],"classes":[117],"in":[118,185,196],"many":[119],"tissues.":[120],"RESULTS:":[121],"We":[122],"present":[123],"GTExVisualizer,":[125],"platform":[127],"analyse":[131,150],"data.":[133],"This":[134],"tool":[135,199],"contains":[136],"web":[138],"interface":[139],"able":[140],"to:":[141],"(i)":[142],"graphically":[143],"represent":[144],"study":[146],"results;":[148],"(ii)":[149],"genes":[151],"using":[152],"patterns,":[155],"also":[156],"integrated":[157],"network-based":[159],"modules;":[160],"(iii)":[162],"report":[163],"plot-based":[166],"representation":[167],"(gene)":[171],"networks.":[172],"Finally,":[173],"allows":[175],"user":[177],"obtain":[179],"basic":[180],"statistics":[181],"which":[182],"evidence":[183],"differences":[184],"among":[188],"groups.":[190],"CONCLUSION:":[191],"The":[192,215],"GTExVisualizer":[193,210],"novelty":[194],"consists":[195],"providing":[197],"studying":[201],"ageing/sex-related":[202],"processes.":[206],"AVAILABILITY":[207],"AND":[208],"IMPLEMENTATION:":[209],"available":[212,221],"at:":[213,222],"http://gtexvisualizer.herokuapp.com.":[214],"code":[217],"are":[220],"https://github.com/UgoLomoio/gtex_visualizer.":[223]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
