{"id":"https://openalex.org/W4367668844","doi":"https://doi.org/10.1093/bioinformatics/btad295","title":"BUSZ: compressed BUS files","display_name":"BUSZ: compressed BUS files","publication_year":2023,"publication_date":"2023-05-01","ids":{"openalex":"https://openalex.org/W4367668844","doi":"https://doi.org/10.1093/bioinformatics/btad295","pmid":"https://pubmed.ncbi.nlm.nih.gov/37129540"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad295","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad295/50169813/btad295.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad295/50169813/btad295.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075148593","display_name":"P\u00e9tur Helgi Einarsson","orcid":"https://orcid.org/0000-0002-1665-7459"},"institutions":[{"id":"https://openalex.org/I165368041","display_name":"University of Iceland","ror":"https://ror.org/01db6h964","country_code":"IS","type":"education","lineage":["https://openalex.org/I165368041"]}],"countries":["IS"],"is_corresponding":false,"raw_author_name":"P\u00e9tur Helgi Einarsson","raw_affiliation_strings":["Faculty of Industrial Engineering, Mechanical Engineering, and Computer Science, University of Iceland , Reykjav\u00edk, Iceland"],"raw_orcid":"https://orcid.org/0000-0002-1665-7459","affiliations":[{"raw_affiliation_string":"Faculty of Industrial Engineering, Mechanical Engineering, and Computer Science, University of Iceland , Reykjav\u00edk, Iceland","institution_ids":["https://openalex.org/I165368041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018556494","display_name":"P\u00e1ll Melsted","orcid":"https://orcid.org/0000-0002-8418-6724"},"institutions":[{"id":"https://openalex.org/I165368041","display_name":"University of Iceland","ror":"https://ror.org/01db6h964","country_code":"IS","type":"education","lineage":["https://openalex.org/I165368041"]}],"countries":["IS"],"is_corresponding":true,"raw_author_name":"P\u00e1ll Melsted","raw_affiliation_strings":["Faculty of Industrial Engineering, Mechanical Engineering, and Computer Science, University of Iceland , Reykjav\u00edk, Iceland"],"raw_orcid":"https://orcid.org/0000-0002-8418-6724","affiliations":[{"raw_affiliation_string":"Faculty of Industrial Engineering, Mechanical Engineering, and Computer Science, University of Iceland , Reykjav\u00edk, Iceland","institution_ids":["https://openalex.org/I165368041"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5018556494"],"corresponding_institution_ids":["https://openalex.org/I165368041"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3313,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.63114311,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"39","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.8974000215530396,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.8974000215530396,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.01080000028014183,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.010400000028312206,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7294877767562866}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7294877767562866}],"mesh":[{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad295","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad295/50169813/btad295.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37129540","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37129540","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10185401","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10185401","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10185401/pdf/btad295.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad295","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad295/50169813/btad295.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4367668844.pdf"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2069056415","https://openalex.org/W2159084616","https://openalex.org/W2950519970","https://openalex.org/W3145635506","https://openalex.org/W4280598116"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"SUMMARY:":[0],"We":[1,35],"describe":[2],"a":[3,47,90],"compression":[4,20,31,53],"scheme":[5],"for":[6,95],"BUS":[7,41],"files":[8,42,74],"and":[9,32,69,111],"an":[10,81,112],"implementation":[11,113],"of":[12,50,93,104,122],"the":[13,16,58,65,85,96,105,120],"algorithm":[14,21,38],"in":[15,71,84,89],"BUStools":[17],"software.":[18],"Our":[19,52],"yields":[22],"smaller":[23,73],"file":[24,86],"sizes":[25],"than":[26,57,64,75],"gzip,":[27],"at":[28,109,114,127],"significantly":[29],"faster":[30,56],"decompression":[33],"speeds.":[34],"evaluated":[36],"our":[37],"on":[39],"533":[40],"from":[43],"scRNA-seq":[44],"experiments":[45],"with":[46],"total":[48],"size":[49,92],"1TB.":[51],"is":[54,107,125],"2.2\u00d7":[55],"fastest":[59,66],"gzip":[60],"option":[61,68],"35%":[62],"slower":[63],"zstd":[67],"results":[70,121],"1.5\u00d7":[72],"both":[76],"methods.":[77],"This":[78],"amounts":[79],"to":[80,118],"8.3\u00d7":[82],"reduction":[83],"size,":[87],"resulting":[88],"compressed":[91],"122GB":[94],"dataset.":[97],"AVAILABILITY":[98],"AND":[99],"IMPLEMENTATION:":[100],"A":[101],"complete":[102],"description":[103],"format":[106],"available":[108,126],"https://github.com/BUStools/BUSZ-format":[110],"https://github.com/BUStools/bustools.":[115],"The":[116],"code":[117],"reproduce":[119],"this":[123],"article":[124],"https://github.com/pmelsted/BUSZ_paper.":[128]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
