{"id":"https://openalex.org/W4366721767","doi":"https://doi.org/10.1093/bioinformatics/btad276","title":"spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape","display_name":"spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape","publication_year":2023,"publication_date":"2023-04-21","ids":{"openalex":"https://openalex.org/W4366721767","doi":"https://doi.org/10.1093/bioinformatics/btad276","pmid":"https://pubmed.ncbi.nlm.nih.gov/37084275"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad276","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad276","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad276/50061474/btad276.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad276/50061474/btad276.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021302916","display_name":"Fabio Boniolo","orcid":null},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I4391767962","display_name":"Deutschen Konsortium f\u00fcr Translationale Krebsforschung","ror":"https://ror.org/02pqn3g31","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4391767962","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Fabio Boniolo","raw_affiliation_strings":["Big Data in BioMedicine Group, Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","Broad Institute of MIT and Harvard Present\u2002address:\u2002 , Cambridge, MA, USA","Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Ismaninger Str. 22 , Munich 81675, Germany","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum Rechts der Isar, School of Medicine, Technical University of Munich , Munich 81675, Germany","Division of Translational Cancer Research, German Cancer Research Center (DKFZ) and German Cancer Consortium (DKTK), Im Neuenheimer Feld 280 , Heidelberg 69120, Germany","Present\u2002address:\u2002Department of Pediatric Oncology, Dana-Farber Cancer Institute , Boston, MA, USA","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum Rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Big Data in BioMedicine Group, Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Broad Institute of MIT and Harvard Present\u2002address:\u2002 , Cambridge, MA, USA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Ismaninger Str. 22 , Munich 81675, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum Rechts der Isar, School of Medicine, Technical University of Munich , Munich 81675, Germany","institution_ids":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"raw_affiliation_string":"Division of Translational Cancer Research, German Cancer Research Center (DKFZ) and German Cancer Consortium (DKTK), Im Neuenheimer Feld 280 , Heidelberg 69120, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4391767962"]},{"raw_affiliation_string":"Present\u2002address:\u2002Department of Pediatric Oncology, Dana-Farber Cancer Institute , Boston, MA, USA","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum Rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034710756","display_name":"Markus Hoffmann","orcid":"https://orcid.org/0000-0002-1920-288X"},"institutions":[{"id":"https://openalex.org/I4210090567","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210090567"]},{"id":"https://openalex.org/I4210137766","display_name":"Institute for Advanced Study","ror":"https://ror.org/03xg85719","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210137766"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Markus Hoffmann","raw_affiliation_strings":["Big Data in BioMedicine Group, Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","Institute for Advanced Study, Technical University of Munich , Garching 85748, Germany","Present\u00a0address:\u00a0National Institute of Diabetes, Digestive, and Kidney Diseases , Bethesda, MD 20892, USA","Institute for Advanced Study (Lichtenbergstrasse 2 a, D-85748 Garching, Germany), Technical University of Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Big Data in BioMedicine Group, Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute for Advanced Study, Technical University of Munich , Garching 85748, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Present\u00a0address:\u00a0National Institute of Diabetes, Digestive, and Kidney Diseases , Bethesda, MD 20892, USA","institution_ids":["https://openalex.org/I4210090567"]},{"raw_affiliation_string":"Institute for Advanced Study (Lichtenbergstrasse 2 a, D-85748 Garching, Germany), Technical University of Munich, Germany","institution_ids":["https://openalex.org/I62916508","https://openalex.org/I4210137766"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012495873","display_name":"Norman Roggendorf","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Norman Roggendorf","raw_affiliation_strings":["Big Data in BioMedicine Group, Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany"],"affiliations":[{"raw_affiliation_string":"Big Data in BioMedicine Group, Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075179252","display_name":"Bahar Tercan","orcid":"https://orcid.org/0000-0002-5332-264X"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bahar Tercan","raw_affiliation_strings":["Institute for Systems Biology , Seattle, WA 98109, United States"],"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology , Seattle, WA 98109, United States","institution_ids":["https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073222532","display_name":"Jan Baumbach","orcid":"https://orcid.org/0000-0002-0282-0462"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DE","DK"],"is_corresponding":false,"raw_author_name":"Jan Baumbach","raw_affiliation_strings":["Chair of Computational Systems Biology, University of Hamburg , Hamburg, Germany","Computational BioMedicine Lab, University of Southern Denmark , Odense, Denmark"],"affiliations":[{"raw_affiliation_string":"Chair of Computational Systems Biology, University of Hamburg , Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Computational BioMedicine Lab, University of Southern Denmark , Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059694547","display_name":"Mauro A. A. Castro","orcid":"https://orcid.org/0000-0003-4942-8131"},"institutions":[{"id":"https://openalex.org/I52418104","display_name":"Universidade Federal do Paran\u00e1","ror":"https://ror.org/05syd6y78","country_code":"BR","type":"education","lineage":["https://openalex.org/I52418104"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Mauro A A Castro","raw_affiliation_strings":["Bioinformatics and Systems Biology Laboratory, Universidade Federal do Paran\u00e1 , Curitiba, Brazil"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Laboratory, Universidade Federal do Paran\u00e1 , Curitiba, Brazil","institution_ids":["https://openalex.org/I52418104"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061003724","display_name":"A Gordon Robertson","orcid":null},"institutions":[{"id":"https://openalex.org/I4210132220","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210132220"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"A Gordon Robertson","raw_affiliation_strings":["BC Cancer Genome Sciences Centre , Vancouver, BC V5Z 4S6, Canada","Present\u00a0address:\u00a0Dxige Research Inc. , Courtenay, BC V9N 1C2, Canada"],"affiliations":[{"raw_affiliation_string":"BC Cancer Genome Sciences Centre , Vancouver, BC V5Z 4S6, Canada","institution_ids":["https://openalex.org/I4210132220"]},{"raw_affiliation_string":"Present\u00a0address:\u00a0Dxige Research Inc. , Courtenay, BC V9N 1C2, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090240499","display_name":"Dieter Saur","orcid":"https://orcid.org/0000-0001-5874-0210"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I4391767962","display_name":"Deutschen Konsortium f\u00fcr Translationale Krebsforschung","ror":"https://ror.org/02pqn3g31","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4391767962","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dieter Saur","raw_affiliation_strings":["Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Ismaninger Str. 22 , Munich 81675, Germany","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum Rechts der Isar, School of Medicine, Technical University of Munich , Munich 81675, Germany","Division of Translational Cancer Research, German Cancer Research Center (DKFZ) and German Cancer Consortium (DKTK), Im Neuenheimer Feld 280 , Heidelberg 69120, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Ismaninger Str. 22 , Munich 81675, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum Rechts der Isar, School of Medicine, Technical University of Munich , Munich 81675, Germany","institution_ids":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"raw_affiliation_string":"Division of Translational Cancer Research, German Cancer Research Center (DKFZ) and German Cancer Consortium (DKTK), Im Neuenheimer Feld 280 , Heidelberg 69120, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I4391767962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035928806","display_name":"Markus List","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Markus List","raw_affiliation_strings":["Big Data in BioMedicine Group, Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany"],"affiliations":[{"raw_affiliation_string":"Big Data in BioMedicine Group, Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5034710756","https://openalex.org/A5035928806"],"corresponding_institution_ids":["https://openalex.org/I4210090567","https://openalex.org/I4210137766","https://openalex.org/I62916508"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3073,"currency":"EUR","value_usd":3314},"fwci":3.3053,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.92175315,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"39","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6568143367767334},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5279425978660583},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4987068176269531},{"id":"https://openalex.org/keywords/competing-endogenous-rna","display_name":"Competing endogenous RNA","score":0.4481557309627533},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32243597507476807},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28764742612838745},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19572916626930237},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1468915045261383}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6568143367767334},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5279425978660583},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4987068176269531},{"id":"https://openalex.org/C60365752","wikidata":"https://www.wikidata.org/wiki/Q5156306","display_name":"Competing endogenous RNA","level":5,"score":0.4481557309627533},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32243597507476807},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28764742612838745},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19572916626930237},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1468915045261383},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.0},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btad276","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad276","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad276/50061474/btad276.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37084275","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37084275","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10220456","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10220456","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10220456/pdf/btad276.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:sdu.dk:openaire/40da8dfa-4bd6-4508-a41b-6ac8df50ed42","is_oa":true,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/40da8dfa-4bd6-4508-a41b-6ac8df50ed42","pdf_url":"https://findresearcher.sdu.dk/ws/files/230974222/btad276.pdf","source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Boniolo, F, Hoffmann, M, Roggendorf, N, Tercan, B, Baumbach, J, Castro, M A A, Robertson, A G, Saur, D & List, M 2023, 'spongEffects : ceRNA modules offer patient-specific insights into the miRNA regulatory landscape', Bioinformatics, vol. 39, no. 5, btad276. https://doi.org/10.1093/bioinformatics/btad276","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1773420","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1773420","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad276","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad276","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad276/50061474/btad276.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8700000047683716,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1690928957","display_name":null,"funder_award_id":"777111","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G191025471","display_name":null,"funder_award_id":"422216132","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G2011551980","display_name":null,"funder_award_id":"01ZX1910","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G208820641","display_name":null,"funder_award_id":"515991405","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G2224195225","display_name":null,"funder_award_id":"01ZX2210D","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G2734144814","display_name":null,"funder_award_id":"Munich","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G3540257906","display_name":null,"funder_award_id":"01ZX2210D *","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G3707397737","display_name":null,"funder_award_id":"SA 1374/8-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G385209353","display_name":null,"funder_award_id":"515571394","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4447653093","display_name":null,"funder_award_id":"Network","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5106512922","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5168466499","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5319977054","display_name":null,"funder_award_id":"01ZX1908A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6024419964","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6492216678","display_name":null,"funder_award_id":"01ZX1910D","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6777869726","display_name":null,"funder_award_id":"458890590","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7613265528","display_name":"Next Generation Composite Material Heating","funder_award_id":"889059","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G762232396","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8214974693","display_name":"Proneural mechanisms coupling cell cycle exit and differentiation","funder_award_id":"221613","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8503373451","display_name":null,"funder_award_id":"01ZX2208A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4366721767.pdf"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W1519070462","https://openalex.org/W1567333450","https://openalex.org/W1735309556","https://openalex.org/W1831050183","https://openalex.org/W1965347187","https://openalex.org/W1971623350","https://openalex.org/W1983804343","https://openalex.org/W1985308729","https://openalex.org/W1988195734","https://openalex.org/W2005895632","https://openalex.org/W2006683252","https://openalex.org/W2026570544","https://openalex.org/W2030113602","https://openalex.org/W2044702943","https://openalex.org/W2046387002","https://openalex.org/W2096027508","https://openalex.org/W2096283457","https://openalex.org/W2097255042","https://openalex.org/W2097802504","https://openalex.org/W2103570076","https://openalex.org/W2106030955","https://openalex.org/W2128768066","https://openalex.org/W2130430382","https://openalex.org/W2130687298","https://openalex.org/W2134539328","https://openalex.org/W2134629862","https://openalex.org/W2141951041","https://openalex.org/W2149055390","https://openalex.org/W2155735026","https://openalex.org/W2159707944","https://openalex.org/W2162674813","https://openalex.org/W2178773167","https://openalex.org/W2198703760","https://openalex.org/W2259802687","https://openalex.org/W2560367415","https://openalex.org/W2615184377","https://openalex.org/W2738996697","https://openalex.org/W2753109313","https://openalex.org/W2806593469","https://openalex.org/W2898830231","https://openalex.org/W2900503753","https://openalex.org/W2910016486","https://openalex.org/W2912254868","https://openalex.org/W2920891134","https://openalex.org/W2944545583","https://openalex.org/W2953211530","https://openalex.org/W2953737873","https://openalex.org/W2959791350","https://openalex.org/W2965410816","https://openalex.org/W2970771711","https://openalex.org/W2979977874","https://openalex.org/W2980889606","https://openalex.org/W2993347499","https://openalex.org/W3002757383","https://openalex.org/W3006109287","https://openalex.org/W3027637917","https://openalex.org/W3028304854","https://openalex.org/W3033712710","https://openalex.org/W3035075758","https://openalex.org/W3036206386","https://openalex.org/W3082220472","https://openalex.org/W3115880421","https://openalex.org/W3120402053","https://openalex.org/W3128646645","https://openalex.org/W3146983201","https://openalex.org/W3178186398","https://openalex.org/W3190577332","https://openalex.org/W3192755399","https://openalex.org/W3194575560","https://openalex.org/W3213275415","https://openalex.org/W3217454473","https://openalex.org/W4212968246","https://openalex.org/W4213111299","https://openalex.org/W6788387744","https://openalex.org/W7073571659"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2927233132","https://openalex.org/W1998618295","https://openalex.org/W2586183753","https://openalex.org/W3134273865","https://openalex.org/W3135639358","https://openalex.org/W2805285958","https://openalex.org/W2939950766"],"abstract_inverted_index":{"https://bioconductor.org/packages/devel/bioc/html/SPONGE.html.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}