{"id":"https://openalex.org/W4366603469","doi":"https://doi.org/10.1093/bioinformatics/btad259","title":"AcrNET: predicting anti-CRISPR with deep learning","display_name":"AcrNET: predicting anti-CRISPR with deep learning","publication_year":2023,"publication_date":"2023-04-21","ids":{"openalex":"https://openalex.org/W4366603469","doi":"https://doi.org/10.1093/bioinformatics/btad259","pmid":"https://pubmed.ncbi.nlm.nih.gov/37084259"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad259","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad259","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad259/50061469/btad259.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad259/50061469/btad259.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100690430","display_name":"Yunxiang Li","orcid":"https://orcid.org/0000-0003-4743-0975"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Yunxiang Li","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100690430","display_name":"Yunxiang Li","orcid":"https://orcid.org/0000-0003-4743-0975"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yunxiang Li","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018102503","display_name":"Yumeng Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yumeng Wei","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100604665","display_name":"Sheng Xu","orcid":"https://orcid.org/0000-0002-6507-9122"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Sheng Xu","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":"https://orcid.org/0000-0002-6507-9122","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101846980","display_name":"Qingxiong Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Qingxiong Tan","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087040829","display_name":"Licheng Zong","orcid":"https://orcid.org/0000-0001-5418-005X"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Licheng Zong","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":"https://orcid.org/0000-0001-5418-005X","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078001917","display_name":"Jiuming Wang","orcid":"https://orcid.org/0009-0003-9591-156X"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jiuming Wang","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100408474","display_name":"Yixuan Wang","orcid":"https://orcid.org/0000-0002-8989-3129"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yixuan Wang","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060720882","display_name":"Jiayang Chen","orcid":"https://orcid.org/0000-0002-4148-7420"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jiayang Chen","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103017892","display_name":"Liang Hong","orcid":"https://orcid.org/0009-0007-4081-8076"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Liang Hong","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100345753","display_name":"Yu Li","orcid":"https://orcid.org/0000-0002-3664-6722"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Yu Li","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":"https://orcid.org/0000-0002-3664-6722","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100345753","display_name":"Yu Li","orcid":"https://orcid.org/0000-0002-3664-6722"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yu Li","raw_affiliation_strings":["Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China"],"raw_orcid":"https://orcid.org/0000-0002-3664-6722","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Chinese University of Hong Kong , Sha Tin, Hong Kong SAR 999077, China","institution_ids":["https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100345753","https://openalex.org/A5100690430"],"corresponding_institution_ids":["https://openalex.org/I177725633"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.747,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.84675155,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"39","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9244999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9244999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.03350000083446503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.013199999928474426,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.9045090675354004},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6359436511993408},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4778268337249756},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.47443047165870667},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4304066300392151},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2561238408088684},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12735775113105774},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06873154640197754}],"concepts":[{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.9045090675354004},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6359436511993408},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4778268337249756},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.47443047165870667},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4304066300392151},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2561238408088684},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12735775113105774},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06873154640197754}],"mesh":[{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad259","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad259","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad259/50061469/btad259.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37084259","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37084259","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10174705","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10174705","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10174705/pdf/btad259.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad259","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad259","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad259/50061469/btad259.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1495595508","display_name":null,"funder_award_id":"5501329","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"},{"id":"https://openalex.org/G2253502123","display_name":"Deep Learning-Assisted RNA and Protein Structure Prediction, and High Protein Binding-Affinity RNA Design","funder_award_id":"GHP/065/21SZ","funder_id":"https://openalex.org/F4320326427","funder_display_name":"Innovation and Technology Fund"},{"id":"https://openalex.org/G4809109598","display_name":null,"funder_award_id":"4937026","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"},{"id":"https://openalex.org/G5248485515","display_name":null,"funder_award_id":"5501517","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"},{"id":"https://openalex.org/G6709416133","display_name":null,"funder_award_id":"4937025","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"}],"funders":[{"id":"https://openalex.org/F4320322942","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48"},{"id":"https://openalex.org/F4320326427","display_name":"Innovation and Technology Fund","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1592870802","https://openalex.org/W1899503782","https://openalex.org/W1913949000","https://openalex.org/W1981264193","https://openalex.org/W2008708467","https://openalex.org/W2030793934","https://openalex.org/W2043083543","https://openalex.org/W2054394841","https://openalex.org/W2068361619","https://openalex.org/W2102461176","https://openalex.org/W2108581046","https://openalex.org/W2115434912","https://openalex.org/W2119331235","https://openalex.org/W2129279466","https://openalex.org/W2140992384","https://openalex.org/W2430331709","https://openalex.org/W2561826764","https://openalex.org/W2562674913","https://openalex.org/W2564226239","https://openalex.org/W2572080171","https://openalex.org/W2612935389","https://openalex.org/W2615136515","https://openalex.org/W2623277795","https://openalex.org/W2744099942","https://openalex.org/W2757079914","https://openalex.org/W2766352633","https://openalex.org/W2766874121","https://openalex.org/W2890107400","https://openalex.org/W2896457183","https://openalex.org/W2908663744","https://openalex.org/W3011910186","https://openalex.org/W3015370321","https://openalex.org/W3015438624","https://openalex.org/W3024100655","https://openalex.org/W3029055906","https://openalex.org/W3041180919","https://openalex.org/W3045990256","https://openalex.org/W3097237310","https://openalex.org/W3126039337","https://openalex.org/W3146944767","https://openalex.org/W3158075195","https://openalex.org/W3174738524","https://openalex.org/W3199468887","https://openalex.org/W4211083314","https://openalex.org/W4281963872","https://openalex.org/W4389685276","https://openalex.org/W6652574002","https://openalex.org/W6755207826","https://openalex.org/W6790156245"],"related_works":["https://openalex.org/W2731899572","https://openalex.org/W3215138031","https://openalex.org/W4321369474","https://openalex.org/W3009238340","https://openalex.org/W4360585206","https://openalex.org/W4213036952","https://openalex.org/W4285208911","https://openalex.org/W3082895349","https://openalex.org/W4213079790","https://openalex.org/W2248239756"],"abstract_inverted_index":{"MOTIVATION:":[0],"As":[1],"an":[2],"important":[3],"group":[4],"of":[5,14,18,35,152,197],"proteins":[6],"discovered":[7],"in":[8],"phages,":[9],"anti-CRISPR":[10,36,55,84,141,148,198,222],"inhibits":[11],"the":[12,15,31,63,94,102,108,116,120,133,139,147,169,179,194,214,219,224],"activity":[13],"immune":[16],"system":[17],"bacteria":[19],"(i.e.":[20],"CRISPR-Cas),":[21],"offering":[22],"promise":[23],"for":[24,83,119],"gene":[25],"editing":[26],"and":[27,33,44,54,96,175,185,205,218,223,235],"phage":[28],"therapy.":[29],"However,":[30],"prediction":[32,70,109],"discovery":[34],"are":[37,238],"challenging":[38],"due":[39],"to":[40,137],"their":[41],"high":[42],"variability":[43],"fast":[45],"evolution.":[46],"Existing":[47],"biological":[48],"studies":[49],"rely":[50],"on":[51,162],"known":[52],"CRISPR":[53],"pairs,":[56],"which":[57,87,143,159,192],"may":[58,144],"not":[59],"be":[60],"practical":[61],"considering":[62],"huge":[64],"number.":[65],"Computational":[66],"methods":[67],"struggle":[68],"with":[69,125],"performance.":[71,90],"To":[72],"address":[73],"these":[74],"issues,":[75],"we":[76],"propose":[77],"a":[78,153],"novel":[79],"deep":[80],"neural":[81],"network":[82],"analysis":[85,176],"(AcrNET),":[86],"achieves":[88],"significant":[89],"RESULTS:":[91],"On":[92],"both":[93],"cross-fold":[95],"cross-dataset":[97,121],"validation,":[98],"our":[99],"method":[100,136],"outperforms":[101],"state-of-the-art":[103],"methods.":[104],"Notably,":[105],"AcrNET":[106,131,167,211],"improves":[107],"performance":[110],"by":[111],"at":[112],"least":[113],"15%":[114],"regarding":[115],"F1":[117],"score":[118],"test":[122],"problem":[123],"comparing":[124],"state-of-art":[126],"Deep":[127],"Learning":[128],"method.":[129],"Moreover,":[130],"is":[132],"first":[134],"computational":[135],"predict":[138],"detailed":[140],"classes,":[142],"help":[145],"illustrate":[146],"mechanism.":[149],"Taking":[150],"advantage":[151],"Transformer":[154,180],"protein":[155,165],"language":[156],"model":[157,181,237],"ESM-1b,":[158],"was":[160],"pre-trained":[161,236],"250":[163],"million":[164],"sequences,":[166],"overcomes":[168],"data":[170],"scarcity":[171],"problem.":[172],"Extensive":[173],"experiments":[174,207],"suggest":[177],"that":[178,210],"feature,":[182,184],"evolutionary":[183],"local":[186],"structure":[187],"feature":[188],"complement":[189],"each":[190],"other,":[191],"indicates":[193],"critical":[195],"properties":[196],"proteins.":[199],"AlphaFold":[200],"prediction,":[201],"further":[202,208],"motif":[203],"analysis,":[204],"docking":[206],"demonstrate":[209],"can":[212],"capture":[213],"evolutionarily":[215],"conserved":[216],"pattern":[217],"interaction":[220],"between":[221],"target":[225],"implicitly.":[226],"AVAILABILITY":[227],"AND":[228],"IMPLEMENTATION:":[229],"Web":[230],"server:":[231],"https://proj.cse.cuhk.edu.hk/aihlab/AcrNET/.":[232],"Training":[233],"code":[234],"available":[239],"at.":[240]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":6}],"updated_date":"2026-08-12T07:12:00.856984","created_date":"2025-10-10T00:00:00"}
