{"id":"https://openalex.org/W4366983184","doi":"https://doi.org/10.1093/bioinformatics/btad257","title":"Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies","display_name":"Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies","publication_year":2023,"publication_date":"2023-04-25","ids":{"openalex":"https://openalex.org/W4366983184","doi":"https://doi.org/10.1093/bioinformatics/btad257","pmid":"https://pubmed.ncbi.nlm.nih.gov/37097895"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad257","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad257","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad257/50094328/btad257.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad257/50094328/btad257.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029060187","display_name":"Camille Juign\u00e9","orcid":"https://orcid.org/0000-0003-1157-9030"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I4210094622","display_name":"Physiologie Environnement et G\u00e9n\u00e9tique pour l'Animal et les Syst\u00e8mes d'Elevage","ror":"https://ror.org/00mg8nf58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210094622","https://openalex.org/I4210107254","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4399657933","display_name":"L'Institut Agro","ror":"https://ror.org/01dkyve95","country_code":null,"type":"education","lineage":["https://openalex.org/I4210117091","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Camille Juign\u00e9","raw_affiliation_strings":["PEGASE, INRAE, Institut Agro , F-35590 Saint Gilles, France","Univ Rennes, Inria, CNRS, IRISA\u2014UMR 6074 , F-35000 Rennes, France"],"affiliations":[{"raw_affiliation_string":"PEGASE, INRAE, Institut Agro , F-35590 Saint Gilles, France","institution_ids":["https://openalex.org/I4210094622","https://openalex.org/I4210088668","https://openalex.org/I4399657933"]},{"raw_affiliation_string":"Univ Rennes, Inria, CNRS, IRISA\u2014UMR 6074 , F-35000 Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I56067802","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085479796","display_name":"Olivier Dameron","orcid":"https://orcid.org/0000-0001-8959-7189"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Dameron","raw_affiliation_strings":["Univ Rennes, Inria, CNRS, IRISA\u2014UMR 6074 , F-35000 Rennes, France"],"affiliations":[{"raw_affiliation_string":"Univ Rennes, Inria, CNRS, IRISA\u2014UMR 6074 , F-35000 Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I56067802","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024866533","display_name":"Fran\u00e7ois Moreews","orcid":"https://orcid.org/0000-0002-4168-4459"},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]},{"id":"https://openalex.org/I4399657933","display_name":"L'Institut Agro","ror":"https://ror.org/01dkyve95","country_code":null,"type":"education","lineage":["https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210094622","display_name":"Physiologie Environnement et G\u00e9n\u00e9tique pour l'Animal et les Syst\u00e8mes d'Elevage","ror":"https://ror.org/00mg8nf58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210094622","https://openalex.org/I4210107254","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Moreews","raw_affiliation_strings":["PEGASE, INRAE, Institut Agro , F-35590 Saint Gilles, France","Univ Rennes, Inria, CNRS, IRISA\u2014UMR 6074 , F-35000 Rennes, France"],"affiliations":[{"raw_affiliation_string":"PEGASE, INRAE, Institut Agro , F-35590 Saint Gilles, France","institution_ids":["https://openalex.org/I4210094622","https://openalex.org/I4210088668","https://openalex.org/I4399657933"]},{"raw_affiliation_string":"Univ Rennes, Inria, CNRS, IRISA\u2014UMR 6074 , F-35000 Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I56067802","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042112989","display_name":"Florence Gondret","orcid":"https://orcid.org/0000-0001-7997-1560"},"institutions":[{"id":"https://openalex.org/I4210094622","display_name":"Physiologie Environnement et G\u00e9n\u00e9tique pour l'Animal et les Syst\u00e8mes d'Elevage","ror":"https://ror.org/00mg8nf58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210094622","https://openalex.org/I4210107254","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4399657933","display_name":"L'Institut Agro","ror":"https://ror.org/01dkyve95","country_code":null,"type":"education","lineage":["https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Florence Gondret","raw_affiliation_strings":["PEGASE, INRAE, Institut Agro , F-35590 Saint Gilles, France","PEGASE, INRAE, Institut Agro, Saint Gilles, F-35590, France"],"affiliations":[{"raw_affiliation_string":"PEGASE, INRAE, Institut Agro , F-35590 Saint Gilles, France","institution_ids":["https://openalex.org/I4210094622","https://openalex.org/I4210088668","https://openalex.org/I4399657933"]},{"raw_affiliation_string":"PEGASE, INRAE, Institut Agro, Saint Gilles, F-35590, France","institution_ids":["https://openalex.org/I4210094622","https://openalex.org/I4210088668","https://openalex.org/I4399657933"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008418938","display_name":"E. Becker","orcid":"https://orcid.org/0000-0002-7673-0582"},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Emmanuelle Becker","raw_affiliation_strings":["Univ Rennes, Inria, CNRS, IRISA\u2014UMR 6074 , F-35000 Rennes, France"],"affiliations":[{"raw_affiliation_string":"Univ Rennes, Inria, CNRS, IRISA\u2014UMR 6074 , F-35000 Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I56067802","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008418938","https://openalex.org/A5029060187"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802519937","https://openalex.org/I4210088668","https://openalex.org/I4210094622","https://openalex.org/I4399657933","https://openalex.org/I56067802"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3689,"currency":"EUR","value_usd":3978},"fwci":0.4669,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.66402728,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"39","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7322925925254822},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4798033535480499},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.47865283489227295},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.4476704001426697},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.436051607131958},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39353978633880615},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36335963010787964},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2620622515678406}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7322925925254822},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4798033535480499},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.47865283489227295},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.4476704001426697},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.436051607131958},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39353978633880615},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36335963010787964},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2620622515678406},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad257","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad257","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad257/50094328/btad257.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37097895","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37097895","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-04084869v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04084869","pdf_url":"https://hal.science/hal-04084869/document","source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2023, 39 (5), pp.btad257. ⟨10.1093/bioinformatics/btad257⟩","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:10168583","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10168583","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10168583/pdf/btad257.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad257","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad257","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad257/50094328/btad257.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320327215","display_name":"R\u00e9gion Bretagne","ror":null},{"id":"https://openalex.org/F4320331560","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4366983184.pdf"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1969709265","https://openalex.org/W1986365650","https://openalex.org/W2069162648","https://openalex.org/W2096589119","https://openalex.org/W2100525485","https://openalex.org/W2134340731","https://openalex.org/W2152495216","https://openalex.org/W2159482845","https://openalex.org/W2164298117","https://openalex.org/W2908670560","https://openalex.org/W2916475656","https://openalex.org/W2977870980","https://openalex.org/W3102147110","https://openalex.org/W3210712771","https://openalex.org/W3211402536","https://openalex.org/W4220930696","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2357256365","https://openalex.org/W2348502264","https://openalex.org/W2365486383","https://openalex.org/W2362059367","https://openalex.org/W2901443725","https://openalex.org/W2350084742","https://openalex.org/W2357988862","https://openalex.org/W1855558850","https://openalex.org/W2353819887","https://openalex.org/W1852677413"],"abstract_inverted_index":{"We":[0],"provide":[1],"a":[2],"Jupyter":[3],"notebook":[4],"detailing":[5],"the":[6],"analysis":[7],"https://github.com/cjuigne/non_conformities_detection_biopax.":[8]},"counts_by_year":[{"year":2024,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}