{"id":"https://openalex.org/W4362523103","doi":"https://doi.org/10.1093/bioinformatics/btad171","title":"ChemGAPP: a tool for chemical genomics analysis and phenotypic profiling","display_name":"ChemGAPP: a tool for chemical genomics analysis and phenotypic profiling","publication_year":2023,"publication_date":"2023-04-01","ids":{"openalex":"https://openalex.org/W4362523103","doi":"https://doi.org/10.1093/bioinformatics/btad171","pmid":"https://pubmed.ncbi.nlm.nih.gov/37014365"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad171","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/4/btad171/49808798/btad171.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/4/btad171/49808798/btad171.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024921663","display_name":"Hannah M. Doherty","orcid":"https://orcid.org/0000-0002-1216-0621"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Hannah M Doherty","raw_affiliation_strings":["Institute of Microbiology and Infection and School of Biosciences, University of Birmingham , Birmingham B15 2TT, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-1216-0621","affiliations":[{"raw_affiliation_string":"Institute of Microbiology and Infection and School of Biosciences, University of Birmingham , Birmingham B15 2TT, United Kingdom","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072675361","display_name":"George Kritikos","orcid":"https://orcid.org/0000-0003-1434-5176"},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"George Kritikos","raw_affiliation_strings":["European Molecular Biology Laboratory, Genome Biology Unit , Heidelberg 69117, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, Genome Biology Unit , Heidelberg 69117, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029298212","display_name":"Marco Galardini","orcid":"https://orcid.org/0000-0003-2018-8242"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I4210151865","display_name":"Center for Experimental and Clinical Infection Research","ror":"https://ror.org/04bya8j72","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210151865"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marco Galardini","raw_affiliation_strings":["Cluster of Excellence RESIST (EXC 2155), Hannover Medical School (MHH) , Hannover 30625, Germany","Institute for Molecular Bacteriology, TWINCORE Centre for Experimental and Clinical Infection Research, A Joint Venture Between the Hannover Medical School (MHH) and the Helmholtz Centre for Infection Research (HZI) , Hannover 30625, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cluster of Excellence RESIST (EXC 2155), Hannover Medical School (MHH) , Hannover 30625, Germany","institution_ids":["https://openalex.org/I34809795"]},{"raw_affiliation_string":"Institute for Molecular Bacteriology, TWINCORE Centre for Experimental and Clinical Infection Research, A Joint Venture Between the Hannover Medical School (MHH) and the Helmholtz Centre for Infection Research (HZI) , Hannover 30625, Germany","institution_ids":["https://openalex.org/I4210124929","https://openalex.org/I4210151865","https://openalex.org/I34809795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058214324","display_name":"Manuel Banzhaf","orcid":"https://orcid.org/0000-0002-4682-1037"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Manuel Banzhaf","raw_affiliation_strings":["Institute of Microbiology and Infection and School of Biosciences, University of Birmingham , Birmingham B15 2TT, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Microbiology and Infection and School of Biosciences, University of Birmingham , Birmingham B15 2TT, United Kingdom","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027195068","display_name":"Danesh Moradigaravand","orcid":"https://orcid.org/0000-0001-6652-5617"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Danesh Moradigaravand","raw_affiliation_strings":["KAUST Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, Makkah 23955-6900, Saudi Arabia","KAUST Smart-Health Initiative and Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST) , Thuwal, Makkah 23955-6900, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KAUST Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, Makkah 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"KAUST Smart-Health Initiative and Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST) , Thuwal, Makkah 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5024921663","https://openalex.org/A5027195068","https://openalex.org/A5058214324"],"corresponding_institution_ids":["https://openalex.org/I71920554","https://openalex.org/I79619799"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.359,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.80407518,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"39","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4472000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4472000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.15150000154972076,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1298000067472458,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6456777453422546},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6107534170150757},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5718177556991577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5095346570014954},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.4733712077140808},{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.4369223415851593},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3548811972141266},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32175296545028687},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21356996893882751},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19562694430351257}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6456777453422546},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6107534170150757},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5718177556991577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5095346570014954},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.4733712077140808},{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.4369223415851593},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3548811972141266},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32175296545028687},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21356996893882751},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19562694430351257},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad171","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/4/btad171/49808798/btad171.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37014365","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37014365","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10085634","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10085634","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10085634/pdf/btad171.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/687395","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/687395","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad171","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/4/btad171/49808798/btad171.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G4426710296","display_name":"EXC 2155: RESIST  Resolving Infection Susceptibility","funder_award_id":"390874280","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4572713322","display_name":null,"funder_award_id":"SBF005\\1112","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G5500643596","display_name":null,"funder_award_id":"EXC 2155","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6216522092","display_name":null,"funder_award_id":"BAS/1/1108-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G6952636875","display_name":null,"funder_award_id":"222387/Z/21/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G7784417555","display_name":null,"funder_award_id":"MR/V027204/1","funder_id":"https://openalex.org/F4320314731","funder_display_name":"UK Research and Innovation"},{"id":"https://openalex.org/G809963082","display_name":null,"funder_award_id":"SBF005\\1112","funder_id":"https://openalex.org/F4320320241","funder_display_name":"Academy of Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320314731","display_name":"UK Research and Innovation","ror":"https://ror.org/001aqnf71"},{"id":"https://openalex.org/F4320320241","display_name":"Academy of Medical Sciences","ror":"https://ror.org/00c489v88"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4362523103.pdf"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1967220526","https://openalex.org/W2034365378","https://openalex.org/W2042688172","https://openalex.org/W2048593866","https://openalex.org/W2093318125","https://openalex.org/W2096172849","https://openalex.org/W2104918165","https://openalex.org/W2111967267","https://openalex.org/W2115049154","https://openalex.org/W2127073167","https://openalex.org/W2130139983","https://openalex.org/W2130907642","https://openalex.org/W2137890456","https://openalex.org/W2138470019","https://openalex.org/W2138742763","https://openalex.org/W2144939475","https://openalex.org/W2291885911","https://openalex.org/W2470678698","https://openalex.org/W2586340362","https://openalex.org/W2587971270","https://openalex.org/W2766902410","https://openalex.org/W2994030685","https://openalex.org/W3003362316","https://openalex.org/W3161880641","https://openalex.org/W4226270629","https://openalex.org/W4285727841"],"related_works":["https://openalex.org/W1547817677","https://openalex.org/W2341492732","https://openalex.org/W2615678788","https://openalex.org/W3187193180","https://openalex.org/W2023460495","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W2109954095","https://openalex.org/W1967902778","https://openalex.org/W4297799326"],"abstract_inverted_index":{"MOTIVATION:":[0],"High-throughput":[1],"chemical":[2],"genomic":[3],"screens":[4],"produce":[5],"informative":[6],"datasets,":[7],"providing":[8],"valuable":[9],"insights":[10],"into":[11],"unknown":[12],"gene":[13],"function":[14],"on":[15],"a":[16,41,106,137],"genome-wide":[17],"level.":[18],"However,":[19],"there":[20],"is":[21,132],"currently":[22],"no":[23],"comprehensive":[24],"analytic":[25],"package":[26,140],"publicly":[27],"available.":[28],"We":[29],"developed":[30],"ChemGAPP":[31,36,56,64,69,75,81,98,109,131],"to":[32,51],"bridge":[33],"this":[34],"gap.":[35],"integrates":[37],"various":[38],"steps":[39],"in":[40,103,105],"streamlined":[42],"and":[43,74,122],"user-friendly":[44],"format,":[45],"including":[46],"rigorous":[47],"quality":[48],"control":[49],"measures":[50],"curate":[52],"screening":[53],"data.":[54],"RESULTS:":[55],"provides":[57],"three":[58,114],"sub-packages":[59],"for":[60,66,71,77],"different":[61],"chemical-genomic":[62],"screens:":[63],"Big":[65],"large-scale":[67],"screens;":[68,73],"Small":[70,99],"small-scale":[72,107],"GI":[76,110],"genetic":[78],"interaction":[79,126],"screens.":[80],"Big,":[82],"tested":[83],"against":[84,113],"the":[85],"Escherichiacoli":[86],"KEIO":[87],"collection,":[88],"revealed":[89],"reliable":[90],"fitness":[91],"scores":[92],"which":[93],"displayed":[94],"biologically":[95],"relevant":[96],"phenotypes.":[97],"demonstrated":[100],"significant":[101],"changes":[102],"phenotype":[104],"screen.":[108],"was":[111],"benchmarked":[112],"sets":[115],"of":[116],"genes":[117],"with":[118],"known":[119],"epistasis":[120],"types":[121],"successfully":[123],"reproduced":[124],"each":[125],"type.":[127],"AVAILABILITY":[128],"AND":[129],"IMPLEMENTATION:":[130],"available":[133],"at":[134],"https://github.com/HannahMDoherty/ChemGAPP,":[135],"as":[136,141,143],"standalone":[138],"Python":[139],"well":[142],"Streamlit":[144],"applications.":[145]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
