{"id":"https://openalex.org/W4323438782","doi":"https://doi.org/10.1093/bioinformatics/btad121","title":"NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes","display_name":"NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes","publication_year":2023,"publication_date":"2023-03-01","ids":{"openalex":"https://openalex.org/W4323438782","doi":"https://doi.org/10.1093/bioinformatics/btad121","pmid":"https://pubmed.ncbi.nlm.nih.gov/36883694"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad121","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/3/btad121/49571994/btad121.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/3/btad121/49571994/btad121.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103246312","display_name":"Weiming He","orcid":"https://orcid.org/0000-0003-0483-5390"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiming He","raw_affiliation_strings":["BGI-Sanya, BGI-Shenzhen , Sanya 572025, China","BGI-Shenzhen , Shenzhen 518103, China"],"affiliations":[{"raw_affiliation_string":"BGI-Sanya, BGI-Shenzhen , Sanya 572025, China","institution_ids":[]},{"raw_affiliation_string":"BGI-Shenzhen , Shenzhen 518103, China","institution_ids":["https://openalex.org/I100135526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014184851","display_name":"Jian Yang","orcid":"https://orcid.org/0000-0001-6318-8854"},"institutions":[{"id":"https://openalex.org/I199305430","display_name":"Nantong University","ror":"https://ror.org/02afcvw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I199305430"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Yang","raw_affiliation_strings":["Key Laboratory of Neuroregeneration, Ministry of Education and Jiangsu Province, Co-Innovation Center of Neuroregeneration, Nantong University , Nantong, Jiangsu 226001, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Neuroregeneration, Ministry of Education and Jiangsu Province, Co-Innovation Center of Neuroregeneration, Nantong University , Nantong, Jiangsu 226001, China","institution_ids":["https://openalex.org/I199305430"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101601049","display_name":"Jing Yi","orcid":"https://orcid.org/0000-0001-7776-1500"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yi Jing","raw_affiliation_strings":["BGI-Sanya, BGI-Shenzhen , Sanya 572025, China"],"affiliations":[{"raw_affiliation_string":"BGI-Sanya, BGI-Shenzhen , Sanya 572025, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100708995","display_name":"Lian Xu","orcid":"https://orcid.org/0000-0003-1685-605X"},"institutions":[{"id":"https://openalex.org/I199305430","display_name":"Nantong University","ror":"https://ror.org/02afcvw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I199305430"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lian Xu","raw_affiliation_strings":["Key Laboratory of Neuroregeneration, Ministry of Education and Jiangsu Province, Co-Innovation Center of Neuroregeneration, Nantong University , Nantong, Jiangsu 226001, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Neuroregeneration, Ministry of Education and Jiangsu Province, Co-Innovation Center of Neuroregeneration, Nantong University , Nantong, Jiangsu 226001, China","institution_ids":["https://openalex.org/I199305430"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084807686","display_name":"Kang Yu","orcid":"https://orcid.org/0000-0002-3289-2184"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kang Yu","raw_affiliation_strings":["BGI-Shenzhen , Shenzhen 518103, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen , Shenzhen 518103, China","institution_ids":["https://openalex.org/I100135526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052083635","display_name":"Xiaodong Fang","orcid":"https://orcid.org/0000-0001-7061-3337"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaodong Fang","raw_affiliation_strings":["BGI-Sanya, BGI-Shenzhen , Sanya 572025, China","BGI-Shenzhen , Shenzhen 518103, China"],"affiliations":[{"raw_affiliation_string":"BGI-Sanya, BGI-Shenzhen , Sanya 572025, China","institution_ids":[]},{"raw_affiliation_string":"BGI-Shenzhen , Shenzhen 518103, China","institution_ids":["https://openalex.org/I100135526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5052083635"],"corresponding_institution_ids":["https://openalex.org/I100135526"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":23.2657,"has_fulltext":true,"cited_by_count":153,"citation_normalized_percentile":{"value":0.99728559,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"39","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.9426539540290833},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8693606853485107},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7250522375106812},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.680392861366272},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5277023315429688},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.4989738464355469},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.48853597044944763},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4677101969718933},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43997669219970703},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37159639596939087},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.36149483919143677},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26680612564086914},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.17767244577407837},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15261730551719666},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11821538209915161}],"concepts":[{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.9426539540290833},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8693606853485107},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7250522375106812},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.680392861366272},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5277023315429688},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.4989738464355469},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.48853597044944763},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4677101969718933},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43997669219970703},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37159639596939087},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.36149483919143677},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26680612564086914},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.17767244577407837},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15261730551719666},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11821538209915161}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad121","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/3/btad121/49571994/btad121.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36883694","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36883694","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10027429","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10027429","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10027429/pdf/btad121.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad121","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/3/btad121/49571994/btad121.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G8711957445","display_name":null,"funder_award_id":"JSSCBS20211127","funder_id":"https://openalex.org/F4320321605","funder_display_name":"Government of Jiangsu Province"}],"funders":[{"id":"https://openalex.org/F4320321605","display_name":"Government of Jiangsu Province","ror":"https://ror.org/004svx814"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4323438782.pdf"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1599106035","https://openalex.org/W2020134788","https://openalex.org/W2095685450","https://openalex.org/W2156622081","https://openalex.org/W2158804744","https://openalex.org/W2789843538","https://openalex.org/W2921474111","https://openalex.org/W2994888090","https://openalex.org/W3165551447","https://openalex.org/W4205166992","https://openalex.org/W4206516340","https://openalex.org/W4206946104","https://openalex.org/W4223962503","https://openalex.org/W4225696641","https://openalex.org/W4235874578","https://openalex.org/W4281783968","https://openalex.org/W4294190623","https://openalex.org/W4295078843","https://openalex.org/W4297536210","https://openalex.org/W4307922448"],"related_works":["https://openalex.org/W4311179095","https://openalex.org/W4375852817","https://openalex.org/W2991171606","https://openalex.org/W4366224338","https://openalex.org/W2143148606","https://openalex.org/W2165284025","https://openalex.org/W2808721457","https://openalex.org/W2114592519","https://openalex.org/W2150640337","https://openalex.org/W2593890490"],"abstract_inverted_index":{"NGenomeSyn":[0],"is":[1],"freely":[2],"available":[3],"at":[4],"GitHub":[5],"(https://github.com/hewm2008/NGenomeSyn)":[6],"and":[7],"Zenodo":[8],"(https://doi.org/10.5281/zenodo.7645148).":[9]},"counts_by_year":[{"year":2026,"cited_by_count":23},{"year":2025,"cited_by_count":71},{"year":2024,"cited_by_count":45},{"year":2023,"cited_by_count":14}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
