{"id":"https://openalex.org/W4317567302","doi":"https://doi.org/10.1093/bioinformatics/btad044","title":"SBML2HYB: a Python interface for SBML compatible hybrid modeling","display_name":"SBML2HYB: a Python interface for SBML compatible hybrid modeling","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4317567302","doi":"https://doi.org/10.1093/bioinformatics/btad044","pmid":"https://pubmed.ncbi.nlm.nih.gov/36661327"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad044","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad044/49002713/btad044.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad044/49002713/btad044.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101859062","display_name":"Jos\u00e9 M. Pinto","orcid":"https://orcid.org/0000-0002-2196-9756"},"institutions":[{"id":"https://openalex.org/I4210138594","display_name":"Rede de Qu\u00edmica e Tecnologia","ror":"https://ror.org/04j14t006","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210138594"]},{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Pinto","raw_affiliation_strings":["LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-2196-9756","affiliations":[{"raw_affiliation_string":"LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal","institution_ids":["https://openalex.org/I4210138594","https://openalex.org/I83558840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026040695","display_name":"Rafael S. Costa","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138594","display_name":"Rede de Qu\u00edmica e Tecnologia","ror":"https://ror.org/04j14t006","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210138594"]},{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Rafael S Costa","raw_affiliation_strings":["LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-7539-488X","affiliations":[{"raw_affiliation_string":"LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal","institution_ids":["https://openalex.org/I4210138594","https://openalex.org/I83558840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043923137","display_name":"Leonardo Alexandre","orcid":"https://orcid.org/0000-0002-7061-4097"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I4210138594","display_name":"Rede de Qu\u00edmica e Tecnologia","ror":"https://ror.org/04j14t006","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210138594"]},{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Leonardo Alexandre","raw_affiliation_strings":["INESC-ID , Lisboa, Portugal","LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-7061-4097","affiliations":[{"raw_affiliation_string":"INESC-ID , Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal","institution_ids":["https://openalex.org/I4210138594","https://openalex.org/I83558840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025902914","display_name":"Jo\u00e3o R. C. Ramos","orcid":"https://orcid.org/0000-0002-6832-6774"},"institutions":[{"id":"https://openalex.org/I4210138594","display_name":"Rede de Qu\u00edmica e Tecnologia","ror":"https://ror.org/04j14t006","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210138594"]},{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o Ramos","raw_affiliation_strings":["LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-6832-6774","affiliations":[{"raw_affiliation_string":"LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal","institution_ids":["https://openalex.org/I4210138594","https://openalex.org/I83558840"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034295628","display_name":"Rui Oliveira","orcid":"https://orcid.org/0000-0001-8077-4177"},"institutions":[{"id":"https://openalex.org/I4210138594","display_name":"Rede de Qu\u00edmica e Tecnologia","ror":"https://ror.org/04j14t006","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210138594"]},{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Rui Oliveira","raw_affiliation_strings":["LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LAQV-REQUIMTE, Department of Chemistry, NOVA School of Science and Technology, Universidade NOVA de Lisboa , Caparica 2829-516, Portugal","institution_ids":["https://openalex.org/I4210138594","https://openalex.org/I83558840"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5026040695"],"corresponding_institution_ids":["https://openalex.org/I4210138594","https://openalex.org/I83558840"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7319,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.65674497,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.46000000834465027,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.46000000834465027,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.24089999496936798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.08619999885559082,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.9706447124481201},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9326902627944946},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8299327492713928},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.8106964826583862},{"id":"https://openalex.org/keywords/validator","display_name":"Validator","score":0.7198379039764404},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.6826268434524536},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6236428022384644},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5675399303436279},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4783551096916199},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4118683934211731},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3662671446800232},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.18056243658065796},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.13388770818710327},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.12701591849327087}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.9706447124481201},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9326902627944946},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8299327492713928},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.8106964826583862},{"id":"https://openalex.org/C35292069","wikidata":"https://www.wikidata.org/wiki/Q1575458","display_name":"Validator","level":2,"score":0.7198379039764404},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.6826268434524536},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6236428022384644},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5675399303436279},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4783551096916199},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4118683934211731},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3662671446800232},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.18056243658065796},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.13388770818710327},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.12701591849327087},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btad044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad044","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad044/49002713/btad044.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36661327","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36661327","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9889961","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9889961","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9889961/pdf/btad044.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:run.unl.pt:10362/151616","is_oa":true,"landing_page_url":"https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btad044/6994184","pdf_url":"https://run.unl.pt/bitstream/10362/151616/1/btad044.pdf","source":{"id":"https://openalex.org/S4306401014","display_name":"New University of Lisbon's Repository (New University of Lisbon)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:freidok.uni-freiburg.de:283291","is_oa":false,"landing_page_url":"https://freidok.uni-freiburg.de/data/283291","pdf_url":null,"source":{"id":"https://openalex.org/S4306401057","display_name":"FreiDok plus (Universit\u00e4tsbibliothek Freiburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I161046081","host_organization_name":"University of Freiburg","host_organization_lineage":["https://openalex.org/I161046081"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics. - 39, 1 (2023) , btad044, ISSN: 1367-4811","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad044","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad044/49002713/btad044.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2391387122","display_name":"Associated Laboratory for Green Chemistry - Clean Technologies and Processes","funder_award_id":"UIDP/50006/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3011867285","display_name":"HARNESSING THE POWER OF NATURE THROUGH PRODUCTIVE MICROBIAL CONSORTIA IN BIOTECHNOLOGY \u2013 MEASURE, MODEL, MASTER","funder_award_id":"101000733","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4296212410","display_name":null,"funder_award_id":"CEECIND/01399/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"HORIZON2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4378797157","display_name":null,"funder_award_id":"UIDP/50006/2020","funder_id":"https://openalex.org/F4320330090","funder_display_name":"Laborat\u00f3rio Associado para a Qu\u00edmica Verde"},{"id":"https://openalex.org/G5454278309","display_name":null,"funder_award_id":"/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6119126181","display_name":null,"funder_award_id":"UIDP/50006/2020","funder_id":"https://openalex.org/F4320323642","funder_display_name":"Minist\u00e9rio da Ci\u00eancia, Tecnologia e Ensino Superior"},{"id":"https://openalex.org/G8892693454","display_name":"Associated Laboratory for Green Chemistry - Clean Technologies and Processes","funder_award_id":"UIDB/50006/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323642","display_name":"Minist\u00e9rio da Ci\u00eancia, Tecnologia e Ensino Superior","ror":"https://ror.org/045b9pr88"},{"id":"https://openalex.org/F4320330090","display_name":"Laborat\u00f3rio Associado para a Qu\u00edmica Verde","ror":null},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4317567302.pdf"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1964735120","https://openalex.org/W1992322276","https://openalex.org/W1993445719","https://openalex.org/W2005529933","https://openalex.org/W2049642322","https://openalex.org/W2080475980","https://openalex.org/W2102653059","https://openalex.org/W2107062718","https://openalex.org/W2134221731","https://openalex.org/W2138326194","https://openalex.org/W2147960313","https://openalex.org/W2150908245","https://openalex.org/W2154273225","https://openalex.org/W2160751597","https://openalex.org/W2343756961","https://openalex.org/W2944664266","https://openalex.org/W2966354570","https://openalex.org/W3094316663","https://openalex.org/W3109520851","https://openalex.org/W3138715127","https://openalex.org/W3162569201","https://openalex.org/W4233890999","https://openalex.org/W4290791011","https://openalex.org/W4306360081","https://openalex.org/W6663055411"],"related_works":["https://openalex.org/W2082621456","https://openalex.org/W2150908245","https://openalex.org/W2981332207","https://openalex.org/W2211443823","https://openalex.org/W2040642413","https://openalex.org/W3048335229","https://openalex.org/W2146744007","https://openalex.org/W2100525485","https://openalex.org/W2890725831","https://openalex.org/W3041939341"],"abstract_inverted_index":{"SUMMARY:":[0],"Here,":[1],"we":[2,77],"present":[3],"sbml2hyb,":[4],"an":[5,62],"easy-to-use":[6],"standalone":[7],"Python":[8,136],"tool":[9,55,115],"that":[10,31],"facilitates":[11],"the":[12,70,73,94,99,108,113,121,141,146],"conversion":[13],"of":[14,18,72,124],"existing":[15],"mechanistic":[16,33,95],"models":[17,30,42,90,143],"biological":[19,129],"systems":[20,130],"in":[21,49,51],"Systems":[22],"Biology":[23],"Markup":[24],"Language":[25],"(SBML)":[26],"into":[27],"hybrid":[28,41,89,125],"semiparametric":[29],"combine":[32],"functions":[34],"with":[35,61,98],"machine":[36],"learning":[37],"(ML).":[38],"The":[39,54,135],"so-formed":[40],"can":[43],"be":[44],"trained":[45],"and":[46,87,102,116,140],"stored":[47],"back":[48],"databases":[50],"SBML":[52,109],"format.":[53],"supports":[56],"a":[57,80],"user-friendly":[58],"export":[59],"interface":[60],"internal":[63],"format":[64,83],"validator.":[65],"Two":[66],"case":[67,147],"studies":[68,148],"illustrate":[69],"use":[71],"sbml2hyb":[74,114],"tool.":[75],"Additionally,":[76],"describe":[78],"HMOD,":[79],"new":[81],"model":[82,96],"designed":[84],"to":[85,118],"support":[86],"facilitate":[88,120],"building.":[91],"It":[92],"aggregates":[93],"information":[97,101],"ML":[100],"follows":[103],"as":[104,106],"close":[105],"possible":[107],"rules.":[110],"We":[111],"expect":[112],"HMOD":[117],"greatly":[119],"widespread":[122],"usage":[123],"modeling":[126],"techniques":[127],"for":[128,145],"analysis.":[131],"AVAILABILITY":[132],"AND":[133],"IMPLEMENTATION:":[134],"interface,":[137],"source":[138],"code":[139],"example":[142],"used":[144],"are":[149,157],"accessible":[150],"at:":[151],"https://github.com/r-costa/sbml2hyb.":[152],"SUPPLEMENTARY":[153],"INFORMATION:":[154],"Supplementary":[155],"data":[156],"available":[158],"at":[159],"Bioinformatics":[160],"online.":[161]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}
