{"id":"https://openalex.org/W4317479718","doi":"https://doi.org/10.1093/bioinformatics/btad042","title":"FungiExp: a user-friendly database and analysis platform for exploring fungal gene expression and alternative splicing","display_name":"FungiExp: a user-friendly database and analysis platform for exploring fungal gene expression and alternative splicing","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4317479718","doi":"https://doi.org/10.1093/bioinformatics/btad042","pmid":"https://pubmed.ncbi.nlm.nih.gov/36655761"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad042","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad042/48959102/btad042.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad042/48959102/btad042.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103079486","display_name":"Jinding Liu","orcid":"https://orcid.org/0000-0001-5638-8612"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]},{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jinding Liu","raw_affiliation_strings":["Bioinformatics Center, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","Department of Animal Science, Michigan State University , East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Department of Animal Science, Michigan State University , East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100610339","display_name":"Yaru Zhang","orcid":"https://orcid.org/0000-0002-6167-7248"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaru Zhang","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058848278","display_name":"Yapin Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yapin Shi","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080558997","display_name":"Yiqing Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiqing Zheng","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102730376","display_name":"Ya-Li Zhu","orcid":"https://orcid.org/0000-0003-4487-989X"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yali Zhu","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090399415","display_name":"Zhuoran Guan","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuoran Guan","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041818639","display_name":"Danyu Shen","orcid":"https://orcid.org/0000-0002-2973-0010"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Danyu Shen","raw_affiliation_strings":["Department of Plant Pathology, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056206546","display_name":"Daolong Dou","orcid":"https://orcid.org/0000-0001-5226-6642"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Daolong Dou","raw_affiliation_strings":["Department of Plant Pathology, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5041818639"],"corresponding_institution_ids":["https://openalex.org/I119454577"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.019,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.8482768,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11085","display_name":"Fungal Biology and Applications","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6189545392990112},{"id":"https://openalex.org/keywords/user-friendly","display_name":"User Friendly","score":0.5653678774833679},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5605742931365967},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.5042814016342163},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4774668514728546},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.46553316712379456},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45491811633110046},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4466787874698639},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.43569469451904297},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36794736981391907},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3342837691307068},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14619708061218262},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.09953075647354126}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6189545392990112},{"id":"https://openalex.org/C61437842","wikidata":"https://www.wikidata.org/wiki/Q281291","display_name":"User Friendly","level":2,"score":0.5653678774833679},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5605742931365967},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.5042814016342163},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4774668514728546},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.46553316712379456},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45491811633110046},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4466787874698639},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.43569469451904297},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36794736981391907},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3342837691307068},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14619708061218262},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.09953075647354126},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad042","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad042/48959102/btad042.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36655761","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36655761","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9887077","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9887077","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad042","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad042/48959102/btad042.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6299999952316284,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1059270447","display_name":null,"funder_award_id":"32070139","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2358721192","display_name":null,"funder_award_id":"32230089","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5241923653","display_name":null,"funder_award_id":"32270208","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5968846082","display_name":null,"funder_award_id":"KYCXJC2022003","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4317479718.pdf"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1966327575","https://openalex.org/W2066231767","https://openalex.org/W2068854614","https://openalex.org/W2114104545","https://openalex.org/W2130410032","https://openalex.org/W2140099276","https://openalex.org/W2169353806","https://openalex.org/W2179438025","https://openalex.org/W2740085246","https://openalex.org/W3129497573","https://openalex.org/W3216588755"],"related_works":["https://openalex.org/W2321791250","https://openalex.org/W4213427798","https://openalex.org/W2023199111","https://openalex.org/W2564462691","https://openalex.org/W2065030615","https://openalex.org/W2885403345","https://openalex.org/W2052498125","https://openalex.org/W4387768639","https://openalex.org/W2094867951","https://openalex.org/W1535548930"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2}],"updated_date":"2025-12-21T23:12:01.093139","created_date":"2025-10-10T00:00:00"}
