{"id":"https://openalex.org/W4321002099","doi":"https://doi.org/10.1093/bioinformatics/btad033","title":"CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells","display_name":"CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells","publication_year":2023,"publication_date":"2023-02-01","ids":{"openalex":"https://openalex.org/W4321002099","doi":"https://doi.org/10.1093/bioinformatics/btad033","pmid":"https://pubmed.ncbi.nlm.nih.gov/36795083"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad033","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/2/btad033/49228298/btad033.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/2/btad033/49228298/btad033.pdf","any_repository_has_fulltext":true},"authorships":[],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.01364928,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"39","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9452999830245972,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9452999830245972,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/single-cell-analysis","display_name":"Single-cell analysis","score":0.557328462600708},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5544683337211609},{"id":"https://openalex.org/keywords/type","display_name":"Type (biology)","score":0.4969938099384308},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4859684705734253},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46442711353302},{"id":"https://openalex.org/keywords/cell-type","display_name":"Cell type","score":0.42404720187187195},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.3932441771030426},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38350558280944824},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20409855246543884},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10766744613647461},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0998193621635437},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.059557944536209106}],"concepts":[{"id":"https://openalex.org/C2776950831","wikidata":"https://www.wikidata.org/wiki/Q15635432","display_name":"Single-cell analysis","level":3,"score":0.557328462600708},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5544683337211609},{"id":"https://openalex.org/C2777299769","wikidata":"https://www.wikidata.org/wiki/Q3707858","display_name":"Type (biology)","level":2,"score":0.4969938099384308},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4859684705734253},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46442711353302},{"id":"https://openalex.org/C189014844","wikidata":"https://www.wikidata.org/wiki/Q189118","display_name":"Cell type","level":3,"score":0.42404720187187195},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.3932441771030426},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38350558280944824},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20409855246543884},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10766744613647461},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0998193621635437},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.059557944536209106}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad033","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/2/btad033/49228298/btad033.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36795083","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36795083","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9933841","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9933841","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9933841/pdf/btad033.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad033","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/2/btad033/49228298/btad033.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4321002099.pdf","grobid_xml":"https://content.openalex.org/works/W4321002099.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3008241868","https://openalex.org/W4317802300","https://openalex.org/W4307993920","https://openalex.org/W1898241694","https://openalex.org/W4404864737","https://openalex.org/W2930001795","https://openalex.org/W4388653149","https://openalex.org/W4390695629","https://openalex.org/W2036616013","https://openalex.org/W2906080207"],"abstract_inverted_index":{"The":[0],"authors":[1],"apologize":[2],"for":[3],"the":[4,9,15],"following":[5],"errors.Notably,":[6],"most":[7],"of":[8,29],"errors":[10],"are":[11],"about":[12],"representations":[13],"in":[14],"paper":[16],"and":[17,23],"do":[18],"not":[19],"affect":[20],"any":[21],"results":[22,28],"conclusions.(37)":[24],"In":[25],"Fig.":[26],"S13,":[27],"B":[30],"cell-IgG":[31],"were":[32],"updated.":[33]},"counts_by_year":[],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
