{"id":"https://openalex.org/W4316926479","doi":"https://doi.org/10.1093/bioinformatics/btad032","title":"JBrowse Jupyter: a Python interface to JBrowse 2","display_name":"JBrowse Jupyter: a Python interface to JBrowse 2","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4316926479","doi":"https://doi.org/10.1093/bioinformatics/btad032","pmid":"https://pubmed.ncbi.nlm.nih.gov/36648320"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad032","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad032/48959108/btad032.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad032/48959108/btad032.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064655588","display_name":"Teresa De Jesus Martinez","orcid":"https://orcid.org/0000-0002-1947-9539"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Teresa De Jesus Martinez","raw_affiliation_strings":["Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA"],"raw_orcid":"https://orcid.org/0000-0002-1947-9539","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028316698","display_name":"Elliot A. Hershberg","orcid":"https://orcid.org/0000-0003-2068-3366"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elliot A Hershberg","raw_affiliation_strings":["Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA"],"raw_orcid":"https://orcid.org/0000-0003-2068-3366","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016323847","display_name":"Emma Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emma Guo","raw_affiliation_strings":["Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043892950","display_name":"Garrett Stevens","orcid":"https://orcid.org/0000-0002-9781-5323"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Garrett J Stevens","raw_affiliation_strings":["Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA"],"raw_orcid":"https://orcid.org/0000-0002-9781-5323","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027393785","display_name":"Colin Diesh","orcid":"https://orcid.org/0000-0003-2629-7570"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Colin Diesh","raw_affiliation_strings":["Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA"],"raw_orcid":"https://orcid.org/0000-0003-2629-7570","affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023203915","display_name":"Peter Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter Xie","raw_affiliation_strings":["Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049036265","display_name":"Caroline Bridge","orcid":"https://orcid.org/0000-0002-7913-8832"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Caroline Bridge","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510 , Toronto, ON M5G 0A3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510 , Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045794083","display_name":"Scott Cain","orcid":"https://orcid.org/0000-0003-0459-9607"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Scott Cain","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510 , Toronto, ON M5G 0A3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510 , Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045676311","display_name":"Robin Haw","orcid":"https://orcid.org/0000-0002-2013-7835"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Robin Haw","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510 , Toronto, ON M5G 0A3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510 , Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053277772","display_name":"Robert Buels","orcid":"https://orcid.org/0000-0002-9605-5895"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert M Buels","raw_affiliation_strings":["Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052076713","display_name":"Lincoln Stein","orcid":"https://orcid.org/0000-0002-1983-4588"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lincoln D Stein","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510 , Toronto, ON M5G 0A3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510 , Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054625887","display_name":"Ian Holmes","orcid":"https://orcid.org/0000-0001-7639-5369"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ian H Holmes","raw_affiliation_strings":["Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanley Hall, University of California , Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5054625887"],"corresponding_institution_ids":["https://openalex.org/I95457486"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8073,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.72068415,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4142000079154968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4142000079154968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.16030000150203705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.0731000006198883,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9381529092788696},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6593334078788757},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5376507043838501},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5176925659179688},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3701264560222626}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9381529092788696},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6593334078788757},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5376507043838501},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5176925659179688},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3701264560222626},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad032","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad032/48959108/btad032.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36648320","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36648320","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9887080","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9887080","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9887080/pdf/btad032.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad032","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad032/48959108/btad032.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1078007678","display_name":null,"funder_award_id":"HG004483","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G295682930","display_name":null,"funder_award_id":"R01 HG004483","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3354986905","display_name":null,"funder_award_id":"GM080203","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6731701440","display_name":null,"funder_award_id":"R01 GM080203","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4316926479.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W2028713366","https://openalex.org/W2096403311","https://openalex.org/W2114850508","https://openalex.org/W2128016314","https://openalex.org/W2590969672","https://openalex.org/W2950214184","https://openalex.org/W3174992442","https://openalex.org/W3203255635","https://openalex.org/W4226351013","https://openalex.org/W4229658977","https://openalex.org/W4312114021","https://openalex.org/W4317780717","https://openalex.org/W4366224338","https://openalex.org/W6742380489"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W2207495067","https://openalex.org/W1906486629"],"abstract_inverted_index":{"MOTIVATION:":[0],"JBrowse":[1,77,100,123],"Jupyter":[2,52,103,124],"is":[3,125,132],"a":[4,55,69,73],"package":[5,70,90],"that":[6,71],"aims":[7],"to":[8,76,93],"close":[9],"the":[10,36,44,84,128],"gap":[11],"between":[12],"Python":[13,74],"programming":[14],"and":[15,26,63,98,131,140],"genomic":[16],"visualization.":[17,64],"Web-based":[18],"genome":[19,28],"browsers":[20],"are":[21,142],"routinely":[22],"used":[23],"for":[24,134],"publishing":[25],"inspecting":[27],"annotations.":[29],"Historically":[30],"they":[31],"have":[32,67],"been":[33],"deployed":[34],"at":[35,146],"end":[37],"of":[38,60,80],"bioinformatics":[39],"pipelines,":[40],"typically":[41],"decoupled":[42],"from":[43,102],"analysis":[45,62],"itself.":[46],"However,":[47],"emerging":[48],"technologies":[49],"such":[50],"as":[51],"notebooks":[53],"enable":[54],"more":[56],"rapid":[57],"iterative":[58],"cycle":[59],"development,":[61],"RESULTS:":[65],"We":[66],"developed":[68],"provides":[72],"interface":[75],"2's":[78],"suite":[79],"embeddable":[81],"components,":[82],"including":[83],"primary":[85],"Linear":[86],"Genome":[87],"View.":[88],"The":[89],"enables":[91],"users":[92,107],"quickly":[94],"set":[95],"up,":[96],"launch":[97],"customize":[99],"views":[101],"notebooks.":[104],"In":[105],"addition,":[106],"can":[108],"share":[109],"their":[110],"data":[111],"via":[112],"Google's":[113],"Colab":[114],"notebooks,":[115],"providing":[116],"reproducible":[117],"interactive":[118],"views.":[119],"AVAILABILITY":[120],"AND":[121],"IMPLEMENTATION:":[122],"released":[126],"under":[127],"Apache":[129],"License":[130],"available":[133,143],"download":[135],"on":[136,144],"PyPI.":[137],"Source":[138],"code":[139],"demos":[141],"GitHub":[145],"https://github.com/GMOD/jbrowse-jupyter.":[147]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
