{"id":"https://openalex.org/W4315928370","doi":"https://doi.org/10.1093/bioinformatics/btad030","title":"3D-equivariant graph neural networks for protein model quality assessment","display_name":"3D-equivariant graph neural networks for protein model quality assessment","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4315928370","doi":"https://doi.org/10.1093/bioinformatics/btad030","pmid":"https://pubmed.ncbi.nlm.nih.gov/36637199"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad030","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad030/48942769/btad030.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad030/48942769/btad030.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100418423","display_name":"Chen Chen","orcid":"https://orcid.org/0000-0002-2973-461X"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chen Chen","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA"],"raw_orcid":"https://orcid.org/0000-0002-2973-461X","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100373703","display_name":"Xiao Chen","orcid":"https://orcid.org/0000-0002-1531-4833"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiao Chen","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072705391","display_name":"Alex Morehead","orcid":"https://orcid.org/0000-0002-0586-6191"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Morehead","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083523912","display_name":"Tianqi Wu","orcid":"https://orcid.org/0000-0002-1545-3462"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tianqi Wu","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044354277","display_name":"Jianlin Cheng","orcid":"https://orcid.org/0000-0003-0305-2853"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jianlin Cheng","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA"],"raw_orcid":"https://orcid.org/0000-0003-0305-2853","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5044354277"],"corresponding_institution_ids":["https://openalex.org/I76835614"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.1761,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.93043011,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9126999974250793,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9126999974250793,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.03689999878406525,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.013199999928474426,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7249539494514465},{"id":"https://openalex.org/keywords/protein-tertiary-structure","display_name":"Protein tertiary structure","score":0.6032036542892456},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5783072710037231},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5608564019203186},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5394431352615356},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5196386575698853},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.41052180528640747},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35886549949645996},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.132407546043396}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7249539494514465},{"id":"https://openalex.org/C75599170","wikidata":"https://www.wikidata.org/wiki/Q898483","display_name":"Protein tertiary structure","level":2,"score":0.6032036542892456},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5783072710037231},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5608564019203186},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5394431352615356},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5196386575698853},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.41052180528640747},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35886549949645996},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.132407546043396},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012399","descriptor_name":"Rotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012399","descriptor_name":"Rotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012399","descriptor_name":"Rotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad030","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad030/48942769/btad030.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36637199","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36637199","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:osti.gov:2318675","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2318675","pdf_url":"https://www.osti.gov/servlets/purl/2318675","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10089647","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10089647","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10089647/pdf/btad030.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad030","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad030/48942769/btad030.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1059597537","display_name":null,"funder_award_id":"DBI1759934","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1489425746","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1717804517","display_name":null,"funder_award_id":"DBI1759934 and IIS1763246","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2584197162","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2886798821","display_name":null,"funder_award_id":"R01GM146340","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3445377557","display_name":null,"funder_award_id":"DE-SC0021303","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3540221635","display_name":null,"funder_award_id":"R01GM093123","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5108955164","display_name":null,"funder_award_id":"R01 GM093123","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5644518174","display_name":null,"funder_award_id":"IIS1763246","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6305303775","display_name":null,"funder_award_id":"R01 GM146340","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6415277511","display_name":null,"funder_award_id":"R01GM093123 and R01GM146340","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6495930337","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7186599013","display_name":null,"funder_award_id":"under Contract DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7937680025","display_name":null,"funder_award_id":"DE-SC0020400","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8905907956","display_name":null,"funder_award_id":"DE-AR0001213","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4315928370.pdf","grobid_xml":"https://content.openalex.org/works/W4315928370.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W2009502487","https://openalex.org/W2017285544","https://openalex.org/W2097632784","https://openalex.org/W2130479394","https://openalex.org/W2140673705","https://openalex.org/W2144046885","https://openalex.org/W2150831049","https://openalex.org/W2152301430","https://openalex.org/W2514534732","https://openalex.org/W2594725344","https://openalex.org/W2905812122","https://openalex.org/W2950954328","https://openalex.org/W2951639995","https://openalex.org/W2951690294","https://openalex.org/W2967606876","https://openalex.org/W2984761660","https://openalex.org/W2997234557","https://openalex.org/W2999044305","https://openalex.org/W3005407385","https://openalex.org/W3104537585","https://openalex.org/W3132153121","https://openalex.org/W3146944767","https://openalex.org/W3155206330","https://openalex.org/W3171848268","https://openalex.org/W3177828909","https://openalex.org/W3183475563","https://openalex.org/W3186179742","https://openalex.org/W3186243460","https://openalex.org/W4246936399","https://openalex.org/W4281551093"],"related_works":["https://openalex.org/W2062166748","https://openalex.org/W2360401998","https://openalex.org/W2037794263","https://openalex.org/W2059363535","https://openalex.org/W2391251536","https://openalex.org/W2961085424","https://openalex.org/W2362198218","https://openalex.org/W1982750869","https://openalex.org/W2019521278","https://openalex.org/W2034023979"],"abstract_inverted_index":{"MOTIVATION:":[0],"Quality":[1],"assessment":[2],"(QA)":[3],"of":[4,23,95,102,133,137,147,217],"predicted":[5,55,70,151,173],"protein":[6,27,103,170,177,218,235],"tertiary":[7,35,73,115],"structure":[8,28,74,116,178],"models":[9,54,60,69,105,150,172],"plays":[10],"an":[11],"important":[12,42,232],"role":[13],"in":[14],"ranking":[15],"and":[16,50,64,93,121,143,181,228],"using":[17],"them.":[18],"With":[19],"the":[20,52,68,100,108,113,123,131,134,156,182,193,205,215],"recent":[21],"development":[22],"deep":[24,185],"learning":[25,186],"end-to-end":[26,184],"prediction":[29,75,117,179],"techniques":[30],"for":[31,37,139,155,233],"generating":[32],"highly":[33],"confident":[34],"structures":[36,160],"most":[38],"proteins,":[39],"it":[40],"is":[41,89,210,231,244],"to":[43,48,91,98,214],"explore":[44],"corresponding":[45],"QA":[46,195],"strategies":[47],"evaluate":[49],"select":[51],"structural":[53,104,109,149,171,219,229],"by":[56,71,106,153,174,198],"them":[57],"since":[58],"these":[59],"have":[61],"better":[62,191],"quality":[63],"different":[65],"properties":[66],"than":[67,192],"traditional":[72,127,176],"methods.":[76],"RESULTS:":[77],"We":[78,119],"develop":[79],"EnQA,":[80],"a":[81,144,211],"novel":[82],"graph-based":[83],"3D-equivariant":[84,206],"neural":[85,208],"network":[86,209],"method":[87,124],"that":[88,204],"equivariant":[90],"rotation":[92],"translation":[94],"3D":[96],"objects":[97],"estimate":[99],"accuracy":[101],"leveraging":[107],"features":[110,223,230],"acquired":[111],"from":[112],"state-of-the-art":[114,167],"method-AlphaFold2.":[118,187],"train":[120],"test":[122],"on":[125,169],"both":[126,175],"model":[128,194,236],"datasets":[129,132],"(e.g.":[130],"Critical":[135],"Assessment":[136],"Techniques":[138],"Protein":[140],"Structure":[141],"Prediction)":[142],"new":[145],"dataset":[146],"high-quality":[148],"only":[152],"AlphaFold2":[154,199,222],"proteins":[157],"whose":[158],"experimental":[159],"were":[161],"released":[162],"recently.":[163],"Our":[164],"approach":[165,213],"achieves":[166],"performance":[168],"methods":[180],"latest":[183],"It":[188],"performs":[189],"even":[190],"scores":[196],"provided":[197],"itself.":[200],"The":[201,241],"results":[202],"illustrate":[203],"graph":[207],"promising":[212],"evaluation":[216],"models.":[220],"Integrating":[221],"with":[224],"other":[225],"complementary":[226],"sequence":[227],"improving":[234],"QA.":[237],"AVAILABILITY":[238],"AND":[239],"IMPLEMENTATION:":[240],"source":[242],"code":[243],"available":[245,253],"at":[246,254],"https://github.com/BioinfoMachineLearning/EnQA.":[247],"SUPPLEMENTARY":[248],"INFORMATION:":[249],"Supplementary":[250],"data":[251],"are":[252],"Bioinformatics":[255],"online.":[256]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":11}],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2025-10-10T00:00:00"}
