{"id":"https://openalex.org/W4315707233","doi":"https://doi.org/10.1093/bioinformatics/btad022","title":"PANACEA: network-based methods for pharmacotherapy prioritization in personalized oncology","display_name":"PANACEA: network-based methods for pharmacotherapy prioritization in personalized oncology","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4315707233","doi":"https://doi.org/10.1093/bioinformatics/btad022","pmid":"https://pubmed.ncbi.nlm.nih.gov/36689556"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad022","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad022","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad022/48827650/btad022.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad022/48827650/btad022.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003760055","display_name":"Ege \u00dclgen","orcid":"https://orcid.org/0000-0003-2090-3621"},"institutions":[{"id":"https://openalex.org/I4210143914","display_name":"Kent Hastanesi","ror":"https://ror.org/0599zba67","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210143914"]},{"id":"https://openalex.org/I4210163811","display_name":"Ac\u0131badem Adana Hospital","ror":"https://ror.org/05g2amy04","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210163811"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Ege Ulgen","raw_affiliation_strings":["Department of Biostatistics and Medical Informatics, School of Medicine, Acibadem Mehmet Ali Aydinlar University , Istanbul 34752, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Medical Informatics, School of Medicine, Acibadem Mehmet Ali Aydinlar University , Istanbul 34752, Turkey","institution_ids":["https://openalex.org/I4210143914","https://openalex.org/I4210163811"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049825660","display_name":"Ozan \u00d6z\u0131\u015f\u0131k","orcid":"https://orcid.org/0000-0001-5980-8002"},"institutions":[{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ozan Ozisik","raw_affiliation_strings":["Aix Marseille University, Inserm, MMG , Marseille 13385, France"],"affiliations":[{"raw_affiliation_string":"Aix Marseille University, Inserm, MMG , Marseille 13385, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039717404","display_name":"Osman U\u011fur Sezerman","orcid":"https://orcid.org/0000-0003-0905-6783"},"institutions":[{"id":"https://openalex.org/I4210143914","display_name":"Kent Hastanesi","ror":"https://ror.org/0599zba67","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210143914"]},{"id":"https://openalex.org/I4210163811","display_name":"Ac\u0131badem Adana Hospital","ror":"https://ror.org/05g2amy04","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210163811"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Osman Ugur Sezerman","raw_affiliation_strings":["Department of Biostatistics and Medical Informatics, School of Medicine, Acibadem Mehmet Ali Aydinlar University , Istanbul 34752, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Medical Informatics, School of Medicine, Acibadem Mehmet Ali Aydinlar University , Istanbul 34752, Turkey","institution_ids":["https://openalex.org/I4210143914","https://openalex.org/I4210163811"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5003760055"],"corresponding_institution_ids":["https://openalex.org/I4210143914","https://openalex.org/I4210163811"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6008,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.69011274,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/panacea","display_name":"Panacea (medicine)","score":0.9448223114013672},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.6307460069656372},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.6009821891784668},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5912547707557678},{"id":"https://openalex.org/keywords/pharmacotherapy","display_name":"Pharmacotherapy","score":0.5882346630096436},{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.4714708626270294},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32997339963912964},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32724660634994507},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.320134699344635},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3029744029045105},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2459501028060913},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1559481918811798},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15093499422073364},{"id":"https://openalex.org/keywords/alternative-medicine","display_name":"Alternative medicine","score":0.1264743208885193},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.1103910505771637}],"concepts":[{"id":"https://openalex.org/C26993612","wikidata":"https://www.wikidata.org/wiki/Q910154","display_name":"Panacea (medicine)","level":3,"score":0.9448223114013672},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.6307460069656372},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.6009821891784668},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5912547707557678},{"id":"https://openalex.org/C500440147","wikidata":"https://www.wikidata.org/wiki/Q701216","display_name":"Pharmacotherapy","level":2,"score":0.5882346630096436},{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.4714708626270294},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32997339963912964},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32724660634994507},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.320134699344635},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3029744029045105},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2459501028060913},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1559481918811798},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15093499422073364},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.1264743208885193},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.1103910505771637},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad022","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad022","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad022/48827650/btad022.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36689556","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36689556","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9869653","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9869653","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9869653/pdf/btad022.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-04254107v1","is_oa":false,"landing_page_url":"https://amu.hal.science/hal-04254107","pdf_url":null,"source":{"id":"https://openalex.org/S4406922393","display_name":"HAL AMU","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2023, 39 (1), &#x27E8;10.1093/bioinformatics/btad022&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad022","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad022","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad022/48827650/btad022.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5199999809265137}],"awards":[{"id":"https://openalex.org/G23707222","display_name":null,"funder_award_id":"118C039","funder_id":"https://openalex.org/F4320322626","funder_display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu"}],"funders":[{"id":"https://openalex.org/F4320309911","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20"},{"id":"https://openalex.org/F4320322626","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4315707233.pdf"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W954754213","https://openalex.org/W1993247564","https://openalex.org/W2013469333","https://openalex.org/W2015049472","https://openalex.org/W2034269086","https://openalex.org/W2043398720","https://openalex.org/W2059300459","https://openalex.org/W2082426444","https://openalex.org/W2108068107","https://openalex.org/W2115045760","https://openalex.org/W2117692326","https://openalex.org/W2118527670","https://openalex.org/W2130153722","https://openalex.org/W2168303063","https://openalex.org/W2330727090","https://openalex.org/W2461427403","https://openalex.org/W2565848986","https://openalex.org/W2766445261","https://openalex.org/W2807675497","https://openalex.org/W2900569176","https://openalex.org/W2902166610","https://openalex.org/W2916534270","https://openalex.org/W2916892775","https://openalex.org/W2968059852","https://openalex.org/W2976893606","https://openalex.org/W3039977092","https://openalex.org/W3093053585","https://openalex.org/W3093194543","https://openalex.org/W3096828292","https://openalex.org/W3106143834","https://openalex.org/W3107626709","https://openalex.org/W3126560452","https://openalex.org/W3164908261","https://openalex.org/W4206662285","https://openalex.org/W4225529913","https://openalex.org/W6702122975"],"related_works":["https://openalex.org/W4226103442","https://openalex.org/W4394833375","https://openalex.org/W2999563835","https://openalex.org/W2068142083","https://openalex.org/W2581299237","https://openalex.org/W2159063798","https://openalex.org/W2071084184","https://openalex.org/W2121123734","https://openalex.org/W4294804678","https://openalex.org/W4394834418"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
