{"id":"https://openalex.org/W4315707238","doi":"https://doi.org/10.1093/bioinformatics/btad016","title":"A heuristic algorithm solving the mutual-exclusivity-sorting problem","display_name":"A heuristic algorithm solving the mutual-exclusivity-sorting problem","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4315707238","doi":"https://doi.org/10.1093/bioinformatics/btad016","pmid":"https://pubmed.ncbi.nlm.nih.gov/36669133"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad016","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad016/48805292/btad016.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad016/48805292/btad016.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084143561","display_name":"Alessandro Vinceti","orcid":"https://orcid.org/0000-0001-8993-9636"},"institutions":[{"id":"https://openalex.org/I4210115812","display_name":"Human Technopole","ror":"https://ror.org/029gmnc79","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210115812"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Vinceti","raw_affiliation_strings":["Computational Biology Research Centre, Human Technopole , 20157 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Research Centre, Human Technopole , 20157 Milano, Italy","institution_ids":["https://openalex.org/I4210115812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045919484","display_name":"Lucia Trastulla","orcid":"https://orcid.org/0000-0001-8749-475X"},"institutions":[{"id":"https://openalex.org/I4210115812","display_name":"Human Technopole","ror":"https://ror.org/029gmnc79","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210115812"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Lucia Trastulla","raw_affiliation_strings":["Computational Biology Research Centre, Human Technopole , 20157 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Research Centre, Human Technopole , 20157 Milano, Italy","institution_ids":["https://openalex.org/I4210115812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090904309","display_name":"Umberto Perron","orcid":"https://orcid.org/0000-0001-8003-6545"},"institutions":[{"id":"https://openalex.org/I4210115812","display_name":"Human Technopole","ror":"https://ror.org/029gmnc79","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210115812"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Umberto Perron","raw_affiliation_strings":["Computational Biology Research Centre, Human Technopole , 20157 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Research Centre, Human Technopole , 20157 Milano, Italy","institution_ids":["https://openalex.org/I4210115812"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010736650","display_name":"Andrea Raiconi","orcid":"https://orcid.org/0000-0002-7188-8794"},"institutions":[{"id":"https://openalex.org/I4210106125","display_name":"Istituto per le Applicazioni del Calcolo Mauro Picone","ror":"https://ror.org/00ygy3d85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210106125","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Andrea Raiconi","raw_affiliation_strings":["Institute for Applied Mathematics \u201cMauro Picone\u201d, National Research Council (IAC-CNR) , 80131 Napoli, Italy"],"raw_orcid":"https://orcid.org/0000-0002-7188-8794","affiliations":[{"raw_affiliation_string":"Institute for Applied Mathematics \u201cMauro Picone\u201d, National Research Council (IAC-CNR) , 80131 Napoli, Italy","institution_ids":["https://openalex.org/I4210106125","https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084431909","display_name":"Francesco Iorio","orcid":"https://orcid.org/0000-0001-7063-8913"},"institutions":[{"id":"https://openalex.org/I4210115812","display_name":"Human Technopole","ror":"https://ror.org/029gmnc79","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210115812"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Francesco Iorio","raw_affiliation_strings":["Computational Biology Research Centre, Human Technopole , 20157 Milano, Italy"],"raw_orcid":"https://orcid.org/0000-0001-7063-8913","affiliations":[{"raw_affiliation_string":"Computational Biology Research Centre, Human Technopole , 20157 Milano, Italy","institution_ids":["https://openalex.org/I4210115812"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5010736650","https://openalex.org/A5084431909"],"corresponding_institution_ids":["https://openalex.org/I4210106125","https://openalex.org/I4210115812","https://openalex.org/I4210155236"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.9112,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.77722505,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.38929998874664307,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.38929998874664307,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.1517000049352646,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.08730000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/row","display_name":"Row","score":0.7334662079811096},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.7210472226142883},{"id":"https://openalex.org/keywords/sort","display_name":"sort","score":0.6641713380813599},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6461752653121948},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.6451096534729004},{"id":"https://openalex.org/keywords/logical-matrix","display_name":"Logical matrix","score":0.5450114011764526},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5275461673736572},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.5243827700614929},{"id":"https://openalex.org/keywords/row-and-column-spaces","display_name":"Row and column spaces","score":0.5159392952919006},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.4676760137081146},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.45301514863967896},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3672594428062439},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3433040976524353},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2530086040496826},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.234395831823349},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.1721828579902649},{"id":"https://openalex.org/keywords/group","display_name":"Group (periodic table)","score":0.13177889585494995},{"id":"https://openalex.org/keywords/arithmetic","display_name":"Arithmetic","score":0.10453057289123535}],"concepts":[{"id":"https://openalex.org/C135598885","wikidata":"https://www.wikidata.org/wiki/Q1366302","display_name":"Row","level":2,"score":0.7334662079811096},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.7210472226142883},{"id":"https://openalex.org/C88548561","wikidata":"https://www.wikidata.org/wiki/Q347599","display_name":"sort","level":2,"score":0.6641713380813599},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6461752653121948},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.6451096534729004},{"id":"https://openalex.org/C163561899","wikidata":"https://www.wikidata.org/wiki/Q1994977","display_name":"Logical matrix","level":3,"score":0.5450114011764526},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5275461673736572},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.5243827700614929},{"id":"https://openalex.org/C104140500","wikidata":"https://www.wikidata.org/wiki/Q2088159","display_name":"Row and column spaces","level":3,"score":0.5159392952919006},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.4676760137081146},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.45301514863967896},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3672594428062439},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3433040976524353},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2530086040496826},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.234395831823349},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.1721828579902649},{"id":"https://openalex.org/C2781311116","wikidata":"https://www.wikidata.org/wiki/Q83306","display_name":"Group (periodic table)","level":2,"score":0.13177889585494995},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.10453057289123535},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad016","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad016/48805292/btad016.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36669133","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36669133","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9857977","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9857977","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9857977/pdf/btad016.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad016","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad016","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad016/48805292/btad016.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1709564214","https://openalex.org/W1899117259","https://openalex.org/W2011941471","https://openalex.org/W2012254521","https://openalex.org/W2031541159","https://openalex.org/W2039189450","https://openalex.org/W2099111195","https://openalex.org/W2112728955","https://openalex.org/W2118527670","https://openalex.org/W2121443461","https://openalex.org/W2137724360","https://openalex.org/W2144940507","https://openalex.org/W2149441684","https://openalex.org/W2158485828","https://openalex.org/W2160584334","https://openalex.org/W2161488606","https://openalex.org/W2163025055","https://openalex.org/W2168698826","https://openalex.org/W2342639474","https://openalex.org/W2461427403","https://openalex.org/W2597062310","https://openalex.org/W2704159227","https://openalex.org/W2735132087","https://openalex.org/W2741508285","https://openalex.org/W2752346384","https://openalex.org/W2778370306","https://openalex.org/W2800903895","https://openalex.org/W2909800464","https://openalex.org/W2936686072","https://openalex.org/W2947775439","https://openalex.org/W2952088773","https://openalex.org/W2964619400","https://openalex.org/W2986041539","https://openalex.org/W2994966800","https://openalex.org/W3004480399","https://openalex.org/W3006225682","https://openalex.org/W3028182697","https://openalex.org/W3093253498","https://openalex.org/W3094386380","https://openalex.org/W3098487500","https://openalex.org/W3165855328","https://openalex.org/W3202655719","https://openalex.org/W4200503699","https://openalex.org/W4225820450","https://openalex.org/W6639530783","https://openalex.org/W6684830039","https://openalex.org/W6805544361"],"related_works":["https://openalex.org/W2313440505","https://openalex.org/W3123744736","https://openalex.org/W2137691148","https://openalex.org/W1505848319","https://openalex.org/W2793842478","https://openalex.org/W2954021425","https://openalex.org/W2899731217","https://openalex.org/W1995796255","https://openalex.org/W2018001349","https://openalex.org/W2101954823"],"abstract_inverted_index":{"MOTIVATION:":[0],"Binary":[1],"(or":[2],"Boolean)":[3],"matrices":[4],"provide":[5],"a":[6,71,124,147,158],"common":[7],"effective":[8,91],"data":[9,220],"representation":[10],"adopted":[11],"in":[12,39,64,189],"several":[13],"domains":[14],"of":[15,50,123,157,171,185],"computational":[16],"biology,":[17],"especially":[18],"for":[19,55,199],"investigating":[20],"cancer":[21,40,81],"and":[22,85,101,121,140,155,208],"other":[23],"human":[24],"diseases.":[25],"For":[26],"instance,":[27],"they":[28],"are":[29,202,209,221],"used":[30],"to":[31,61,89,99,112,118,127,152,161,205],"summarize":[32],"genetic":[33],"aberrations-copy":[34],"number":[35,184],"alterations":[36],"or":[37,57,68],"mutations-observed":[38],"patient":[41],"cohorts,":[42],"effectively":[43],"highlighting":[44],"combinatorial":[45,92],"relations":[46],"among":[47],"them.":[48],"One":[49],"these":[51,109,206],"is":[52],"the":[53,65,137,169,183,190],"tendency":[54],"two":[56],"more":[58],"genes":[59],"not":[60],"be":[62,113],"co-mutated":[63],"same":[66,191],"sample":[67],"patient,":[69],"i.e.":[70],"mutual-exclusivity":[72,131,163,200],"trend.":[73],"Exploiting":[74],"this":[75],"principle":[76],"has":[77,86],"allowed":[78],"identifying":[79],"new":[80],"driver":[82],"protein-interaction":[83],"networks":[84],"been":[87],"proposed":[88],"design":[90],"anti-cancer":[93],"therapies":[94],"rationally.":[95],"Several":[96],"tools":[97,110,198],"exist":[98],"identify":[100],"statistically":[102],"assess":[103],"mutual-exclusive":[104],"cancer-driver":[105],"genomic":[106],"events.":[107],"However,":[108],"need":[111],"equipped":[114],"with":[115],"robust/efficient":[116],"methods":[117],"sort":[119,153],"rows":[120,154,180],"columns":[122,156],"binary":[125,159],"matrix":[126,160],"visually":[128],"highlight":[129,162],"possible":[130],"trends.":[132],"RESULTS:":[133],"Here,":[134,193],"we":[135,194],"formalize":[136],"mutual-exclusivity-sorting":[138],"problem":[139],"present":[141],"MutExMatSorting:":[142],"an":[143],"R":[144],"package":[145],"implementing":[146],"computationally":[148],"efficient":[149],"algorithm":[150,167],"able":[151],"patterns.":[164],"Particularly,":[165],"our":[166],"minimizes":[168],"extent":[170],"collective":[172],"vertical":[173],"overlap":[174],"between":[175],"consecutive":[176],"non-zero":[177,187],"entries":[178,188],"across":[179],"while":[181],"maximizing":[182],"adjacent":[186],"row.":[192],"demonstrate":[195],"that":[196],"existing":[197],"analysis":[201],"suboptimal":[203],"according":[204],"criteria":[207],"outperformed":[210],"by":[211],"MutExMatSorting.":[212],"AVAILABILITY":[213],"AND":[214],"IMPLEMENTATION:":[215],"https://github.com/AleVin1995/MutExMatSorting.":[216],"SUPPLEMENTARY":[217],"INFORMATION:":[218],"Supplementary":[219],"available":[222],"at":[223],"Bioinformatics":[224],"online.":[225]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-09T15:46:55.921056","created_date":"2025-10-10T00:00:00"}
