{"id":"https://openalex.org/W4315619028","doi":"https://doi.org/10.1093/bioinformatics/btad008","title":"ABSP: an automated R tool to efficiently analyze region-specific CpG methylation from bisulfite sequencing PCR","display_name":"ABSP: an automated R tool to efficiently analyze region-specific CpG methylation from bisulfite sequencing PCR","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4315619028","doi":"https://doi.org/10.1093/bioinformatics/btad008","pmid":"https://pubmed.ncbi.nlm.nih.gov/36629453"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad008","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad008","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad008/48755307/btad008.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad008/48755307/btad008.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018972167","display_name":"Marie Denoulet","orcid":"https://orcid.org/0000-0002-9668-0439"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I3018718406","display_name":"Centre Hospitalier Universitaire de Lille","ror":"https://ror.org/02ppyfa04","country_code":"FR","type":"funder","lineage":["https://openalex.org/I3018718406"]},{"id":"https://openalex.org/I4210105941","display_name":"Institut pour la Recherche sur le Cancer de Lille","ror":"https://ror.org/01c8cwz57","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210105941"]},{"id":"https://openalex.org/I4387152542","display_name":"CANTHER - H\u00e9t\u00e9rog\u00e9n\u00e9it\u00e9, Plasticit\u00e9 et R\u00e9sistance aux Th\u00e9rapies des Cancers","ror":"https://ror.org/05x9zmx47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I2800921988","https://openalex.org/I3018718406","https://openalex.org/I4210131356","https://openalex.org/I4210141925","https://openalex.org/I4387152542"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie Denoulet","raw_affiliation_strings":["CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","Institut pour la Recherche sur le Cancer de Lille (IRCL) , Lille F-59000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I3018718406","https://openalex.org/I4387152542"]},{"raw_affiliation_string":"Institut pour la Recherche sur le Cancer de Lille (IRCL) , Lille F-59000, France","institution_ids":["https://openalex.org/I4210105941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083289696","display_name":"Mathilde Brul\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I3018718406","display_name":"Centre Hospitalier Universitaire de Lille","ror":"https://ror.org/02ppyfa04","country_code":"FR","type":"funder","lineage":["https://openalex.org/I3018718406"]},{"id":"https://openalex.org/I4210105941","display_name":"Institut pour la Recherche sur le Cancer de Lille","ror":"https://ror.org/01c8cwz57","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210105941"]},{"id":"https://openalex.org/I4387152542","display_name":"CANTHER - H\u00e9t\u00e9rog\u00e9n\u00e9it\u00e9, Plasticit\u00e9 et R\u00e9sistance aux Th\u00e9rapies des Cancers","ror":"https://ror.org/05x9zmx47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I2800921988","https://openalex.org/I3018718406","https://openalex.org/I4210131356","https://openalex.org/I4210141925","https://openalex.org/I4387152542"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mathilde Brul\u00e9","raw_affiliation_strings":["CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","Institut pour la Recherche sur le Cancer de Lille (IRCL) , Lille F-59000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I3018718406","https://openalex.org/I4387152542"]},{"raw_affiliation_string":"Institut pour la Recherche sur le Cancer de Lille (IRCL) , Lille F-59000, France","institution_ids":["https://openalex.org/I4210105941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086755272","display_name":"Fran\u00e7ois Anquez","orcid":"https://orcid.org/0000-0002-2071-5527"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210160651","display_name":"Laboratoire de Physique des Lasers, Atomes et Mol\u00e9cules","ror":"https://ror.org/04e89s906","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2279609970","https://openalex.org/I4210098836","https://openalex.org/I4210160651"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Anquez","raw_affiliation_strings":["CNRS, UMR 8523 - PhLAM\u2014Physique des Lasers Atomes et Mol\u00e9cules, University of Lille , Lille F-59000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, UMR 8523 - PhLAM\u2014Physique des Lasers Atomes et Mol\u00e9cules, University of Lille , Lille F-59000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2279609970","https://openalex.org/I4210160651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050382962","display_name":"Audrey Vincent","orcid":"https://orcid.org/0000-0003-0058-2058"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I3018718406","display_name":"Centre Hospitalier Universitaire de Lille","ror":"https://ror.org/02ppyfa04","country_code":"FR","type":"funder","lineage":["https://openalex.org/I3018718406"]},{"id":"https://openalex.org/I4387152542","display_name":"CANTHER - H\u00e9t\u00e9rog\u00e9n\u00e9it\u00e9, Plasticit\u00e9 et R\u00e9sistance aux Th\u00e9rapies des Cancers","ror":"https://ror.org/05x9zmx47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I2800921988","https://openalex.org/I3018718406","https://openalex.org/I4210131356","https://openalex.org/I4210141925","https://openalex.org/I4387152542"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Audrey Vincent","raw_affiliation_strings":["CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I3018718406","https://openalex.org/I4387152542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107481962","display_name":"Julie Schnipper","orcid":"https://orcid.org/0000-0002-4315-6043"},"institutions":[{"id":"https://openalex.org/I4401041597","display_name":"Laboratoire de physiologie cellulaire et mol\u00e9culaire","ror":"https://ror.org/03vv60b83","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4401041597","https://openalex.org/I4647051"]},{"id":"https://openalex.org/I4647051","display_name":"Universit\u00e9 de Picardie Jules Verne","ror":"https://ror.org/01gyxrk03","country_code":"FR","type":"education","lineage":["https://openalex.org/I4647051"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julie Schnipper","raw_affiliation_strings":["Laboratory of Cellular and Molecular Physiology, UR UPJV 4667, University of Picardie Jules Verne , Amiens 80000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Cellular and Molecular Physiology, UR UPJV 4667, University of Picardie Jules Verne , Amiens 80000, France","institution_ids":["https://openalex.org/I4401041597","https://openalex.org/I4647051"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064613683","display_name":"\u00c9ric Adriaenssens","orcid":"https://orcid.org/0000-0003-3565-5712"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I3018718406","display_name":"Centre Hospitalier Universitaire de Lille","ror":"https://ror.org/02ppyfa04","country_code":"FR","type":"funder","lineage":["https://openalex.org/I3018718406"]},{"id":"https://openalex.org/I4387152542","display_name":"CANTHER - H\u00e9t\u00e9rog\u00e9n\u00e9it\u00e9, Plasticit\u00e9 et R\u00e9sistance aux Th\u00e9rapies des Cancers","ror":"https://ror.org/05x9zmx47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I2800921988","https://openalex.org/I3018718406","https://openalex.org/I4210131356","https://openalex.org/I4210141925","https://openalex.org/I4387152542"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Eric Adriaenssens","raw_affiliation_strings":["CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I3018718406","https://openalex.org/I4387152542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027911156","display_name":"Robert\u2010Alain Toillon","orcid":"https://orcid.org/0000-0001-5483-2118"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I3018718406","display_name":"Centre Hospitalier Universitaire de Lille","ror":"https://ror.org/02ppyfa04","country_code":"FR","type":"funder","lineage":["https://openalex.org/I3018718406"]},{"id":"https://openalex.org/I4387152542","display_name":"CANTHER - H\u00e9t\u00e9rog\u00e9n\u00e9it\u00e9, Plasticit\u00e9 et R\u00e9sistance aux Th\u00e9rapies des Cancers","ror":"https://ror.org/05x9zmx47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I2800921988","https://openalex.org/I3018718406","https://openalex.org/I4210131356","https://openalex.org/I4210141925","https://openalex.org/I4387152542"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Robert-Alain Toillon","raw_affiliation_strings":["CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I3018718406","https://openalex.org/I4387152542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079753614","display_name":"Xuefen Le Bourhis","orcid":"https://orcid.org/0000-0001-6790-6358"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I3018718406","display_name":"Centre Hospitalier Universitaire de Lille","ror":"https://ror.org/02ppyfa04","country_code":"FR","type":"funder","lineage":["https://openalex.org/I3018718406"]},{"id":"https://openalex.org/I4387152542","display_name":"CANTHER - H\u00e9t\u00e9rog\u00e9n\u00e9it\u00e9, Plasticit\u00e9 et R\u00e9sistance aux Th\u00e9rapies des Cancers","ror":"https://ror.org/05x9zmx47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I2800921988","https://openalex.org/I3018718406","https://openalex.org/I4210131356","https://openalex.org/I4210141925","https://openalex.org/I4387152542"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Xuefen Le Bourhis","raw_affiliation_strings":["CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I3018718406","https://openalex.org/I4387152542"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029801587","display_name":"Chann Lagadec","orcid":"https://orcid.org/0000-0002-5182-2069"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I3018718406","display_name":"Centre Hospitalier Universitaire de Lille","ror":"https://ror.org/02ppyfa04","country_code":"FR","type":"funder","lineage":["https://openalex.org/I3018718406"]},{"id":"https://openalex.org/I4210105941","display_name":"Institut pour la Recherche sur le Cancer de Lille","ror":"https://ror.org/01c8cwz57","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210105941"]},{"id":"https://openalex.org/I4387152542","display_name":"CANTHER - H\u00e9t\u00e9rog\u00e9n\u00e9it\u00e9, Plasticit\u00e9 et R\u00e9sistance aux Th\u00e9rapies des Cancers","ror":"https://ror.org/05x9zmx47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I2800921988","https://openalex.org/I3018718406","https://openalex.org/I4210131356","https://openalex.org/I4210141925","https://openalex.org/I4387152542"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Chann Lagadec","raw_affiliation_strings":["CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","Institut pour la Recherche sur le Cancer de Lille (IRCL) , Lille F-59000, France"],"raw_orcid":"https://orcid.org/0000-0002-5182-2069","affiliations":[{"raw_affiliation_string":"CNRS, Inserm, CHU Lille, UMR9020-U1277 - CANTHER\u2014Cancer Heterogeneity Plasticity and Resistance to Therapies, University of Lille , Lille F-59000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I3018718406","https://openalex.org/I4387152542"]},{"raw_affiliation_string":"Institut pour la Recherche sur le Cancer de Lille (IRCL) , Lille F-59000, France","institution_ids":["https://openalex.org/I4210105941"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5029801587"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I3018718406","https://openalex.org/I4210105941","https://openalex.org/I4387152542"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3171,"currency":"EUR","value_usd":3419},"fwci":1.7811,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.84718248,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.961899995803833,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.961899995803833,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.010200000368058681,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.0031999999191612005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6724402904510498},{"id":"https://openalex.org/keywords/bisulfite-sequencing","display_name":"Bisulfite sequencing","score":0.6325783133506775},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.6013196706771851},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5164928436279297},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.49381956458091736},{"id":"https://openalex.org/keywords/bisulfite","display_name":"Bisulfite","score":0.4695359468460083},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.46837693452835083},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.4270905554294586},{"id":"https://openalex.org/keywords/cloning","display_name":"Cloning (programming)","score":0.4184223413467407},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3328982889652252},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32165807485580444},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24977970123291016},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21452021598815918},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11073082685470581},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06201103329658508}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6724402904510498},{"id":"https://openalex.org/C189235521","wikidata":"https://www.wikidata.org/wiki/Q4087270","display_name":"Bisulfite sequencing","level":5,"score":0.6325783133506775},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.6013196706771851},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5164928436279297},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.49381956458091736},{"id":"https://openalex.org/C2775959680","wikidata":"https://www.wikidata.org/wiki/Q2718222","display_name":"Bisulfite","level":5,"score":0.4695359468460083},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.46837693452835083},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.4270905554294586},{"id":"https://openalex.org/C121050878","wikidata":"https://www.wikidata.org/wiki/Q5135020","display_name":"Cloning (programming)","level":2,"score":0.4184223413467407},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3328982889652252},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32165807485580444},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24977970123291016},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21452021598815918},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11073082685470581},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06201103329658508}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013447","descriptor_name":"Sulfites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1093/bioinformatics/btad008","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad008","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad008/48755307/btad008.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36629453","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36629453","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-04488633v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04488633","pdf_url":"https://hal.science/hal-04488633/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2023, 39 (1), &#x27E8;10.1093/bioinformatics/btad008&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9846423","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9846423","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9846423/pdf/btad008.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-03936715v1","is_oa":false,"landing_page_url":"https://u-picardie.hal.science/hal-03936715","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-04469940v1","is_oa":false,"landing_page_url":"https://hal.science/hal-04469940","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:lilloa.univ-lille.fr:20.500.12210/110201","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402203","display_name":"LillOA (Universit\u00e9 de Lille (University Of Lille))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123514","host_organization_name":"Centre d'Etudes en Civilisations, Langues et Litt\u00e9ratures Etrang\u00e8res","host_organization_lineage":["https://openalex.org/I4210123514"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:lilloa.univ-lille.fr:20.500.12210/80231","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.12210/80231","pdf_url":null,"source":{"id":"https://openalex.org/S4306402203","display_name":"LillOA (Universit\u00e9 de Lille (University Of Lille))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123514","host_organization_name":"Centre d'Etudes en Civilisations, Langues et Litt\u00e9ratures Etrang\u00e8res","host_organization_lineage":["https://openalex.org/I4210123514"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:lilloa.univ-lille.fr:20.500.12210/80390","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.12210/80390","pdf_url":null,"source":{"id":"https://openalex.org/S4306402203","display_name":"LillOA (Universit\u00e9 de Lille (University Of Lille))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123514","host_organization_name":"Centre d'Etudes en Civilisations, Langues et Litt\u00e9ratures Etrang\u00e8res","host_organization_lineage":["https://openalex.org/I4210123514"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad008","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad008","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btad008/48755307/btad008.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1345949213","display_name":null,"funder_award_id":"ARC_INCa_LNCC_8068","funder_id":"https://openalex.org/F4320323807","funder_display_name":"Institut National Du Cancer"}],"funders":[{"id":"https://openalex.org/F4320322363","display_name":"Ligue Contre le Cancer","ror":"https://ror.org/00rkrv905"},{"id":"https://openalex.org/F4320323807","display_name":"Institut National Du Cancer","ror":"https://ror.org/03m8vkq32"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4315619028.pdf"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1491724702","https://openalex.org/W1522996100","https://openalex.org/W1964469331","https://openalex.org/W1968263601","https://openalex.org/W1972817327","https://openalex.org/W1979273476","https://openalex.org/W2013350035","https://openalex.org/W2017906697","https://openalex.org/W2051568429","https://openalex.org/W2061731645","https://openalex.org/W2097851896","https://openalex.org/W2117038014","https://openalex.org/W2119493125","https://openalex.org/W2123032740","https://openalex.org/W2155307866","https://openalex.org/W2161584400","https://openalex.org/W2161687993","https://openalex.org/W2164326183","https://openalex.org/W2182868165","https://openalex.org/W2560609054","https://openalex.org/W2733890902","https://openalex.org/W2968658941","https://openalex.org/W3036992898","https://openalex.org/W3040274111","https://openalex.org/W3096783543","https://openalex.org/W3132127071","https://openalex.org/W3153115921","https://openalex.org/W4211055540","https://openalex.org/W4225370546"],"related_works":["https://openalex.org/W2805216920","https://openalex.org/W2619376220","https://openalex.org/W2064302386","https://openalex.org/W2134949149","https://openalex.org/W2035236309","https://openalex.org/W2895945844","https://openalex.org/W1964177829","https://openalex.org/W2911544435","https://openalex.org/W1991992597","https://openalex.org/W2033244804"],"abstract_inverted_index":{"MOTIVATION:":[0],"Nowadays,":[1],"epigenetic":[2],"gene":[3],"regulations":[4],"are":[5,170,180],"studied":[6],"in":[7],"each":[8],"part":[9],"of":[10,32,36,61,75,107,116],"the":[11,38,43,64,72,83,124],"biology,":[12],"from":[13,58,71],"embryonic":[14],"development":[15],"to":[16,25,55,68,80,92,132],"diseases":[17],"such":[18],"as":[19,130,148],"cancers":[20],"and":[21,27,90,119,134,143,157,167],"neurodegenerative":[22],"disorders.":[23],"Currently,":[24],"quantify":[26],"compare":[28,135],"CpG":[29,136],"methylation":[30,137],"levels":[31],"a":[33,88,99,112,145,149],"specific":[34],"region":[35],"interest,":[37],"most":[39,65],"accessible":[40],"technique":[41],"is":[42,53,79,87,140],"bisulfite":[44,108],"sequencing":[45,74,109,126],"PCR":[46,76],"(BSP).":[47],"However,":[48],"no":[49],"existing":[50],"user-friendly":[51,146],"tool":[52,166],"able":[54],"analyze":[56,82],"data":[57,169,179],"all":[59],"approaches":[60],"BSP.":[62],"Therefore,":[63],"convenient":[66],"way":[67],"process":[69,115],"results":[70],"direct":[73],"products":[77],"(direct-BSP)":[78],"manually":[81],"chromatogram":[84],"traces,":[85],"which":[86],"repetitive":[89],"prone":[91],"error":[93],"task.":[94],"RESULTS:":[95],"Here,":[96],"we":[97],"implement":[98],"new":[100],"R-based":[101],"tool,":[102],"called":[103],"ABSP":[104,165],"for":[105],"analysis":[106],"PCR,":[110],"providing":[111],"complete":[113],"analytic":[114],"both":[117],"direct-BSP":[118],"cloning-BSP":[120],"data.":[121],"It":[122,139],"uses":[123],"raw":[125],"trace":[127],"files":[128],"(.ab1)":[129],"input":[131],"compute":[133],"percentages.":[138],"fully":[141],"automated":[142],"includes":[144],"interface":[147],"built-in":[150],"R":[151],"shiny":[152],"app,":[153],"quality":[154],"control":[155],"steps":[156],"generates":[158],"publication-ready":[159],"graphics.":[160],"AVAILABILITY":[161],"AND":[162],"IMPLEMENTATION:":[163],"The":[164],"associated":[168],"available":[171,181],"on":[172],"GitHub":[173],"at":[174,182],"https://github.com/ABSP-methylation-tool/ABSP.":[175],"SUPPLEMENTARY":[176],"INFORMATION:":[177],"Supplementary":[178],"Bioinformatics":[183],"online.":[184]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
