{"id":"https://openalex.org/W4313262010","doi":"https://doi.org/10.1093/bioinformatics/btac846","title":"Systematic analysis of alternative splicing in time course data using Spycone","display_name":"Systematic analysis of alternative splicing in time course data using Spycone","publication_year":2022,"publication_date":"2022-12-29","ids":{"openalex":"https://openalex.org/W4313262010","doi":"https://doi.org/10.1093/bioinformatics/btac846","pmid":"https://pubmed.ncbi.nlm.nih.gov/36579860"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac846","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac846","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac846/48599779/btac846.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac846/48599779/btac846.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073630101","display_name":"Chit Tong Lio","orcid":"https://orcid.org/0000-0003-2297-831X"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Chit Tong Lio","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany"],"raw_orcid":"https://orcid.org/0000-0003-2297-831X","affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018347891","display_name":"Gordon Grabert","orcid":"https://orcid.org/0000-0001-5499-9970"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gordon Grabert","raw_affiliation_strings":["Braunschweig Integrated Centre of Systems Biology (BRICS), TU Braunschweig , Braunschweig 38106, Germany","Division Data Science in Biomedicine, Peter L. Reichertz Institute for Medical Informatics of Technische Universit\u00e4t Braunschweig and Hannover Medical School , Braunschweig 38106, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Braunschweig Integrated Centre of Systems Biology (BRICS), TU Braunschweig , Braunschweig 38106, Germany","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Division Data Science in Biomedicine, Peter L. Reichertz Institute for Medical Informatics of Technische Universit\u00e4t Braunschweig and Hannover Medical School , Braunschweig 38106, Germany","institution_ids":["https://openalex.org/I34809795","https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077513888","display_name":"Zakaria Louadi","orcid":"https://orcid.org/0000-0003-4763-0264"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Zakaria Louadi","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090219030","display_name":"Amit Fenn","orcid":"https://orcid.org/0000-0003-2203-3922"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Amit Fenn","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073222532","display_name":"Jan Baumbach","orcid":"https://orcid.org/0000-0002-0282-0462"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DE","DK"],"is_corresponding":false,"raw_author_name":"Jan Baumbach","raw_affiliation_strings":["Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany","Institute of Mathematics and Computer Science, University of Southern Denmark , Odense 5000, Denmark"],"raw_orcid":"https://orcid.org/0000-0002-0282-0462","affiliations":[{"raw_affiliation_string":"Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Institute of Mathematics and Computer Science, University of Southern Denmark , Odense 5000, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072736528","display_name":"Tim Kacprowski","orcid":"https://orcid.org/0000-0002-5393-2413"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim Kacprowski","raw_affiliation_strings":["Braunschweig Integrated Centre of Systems Biology (BRICS), TU Braunschweig , Braunschweig 38106, Germany","Division Data Science in Biomedicine, Peter L. Reichertz Institute for Medical Informatics of Technische Universit\u00e4t Braunschweig and Hannover Medical School , Braunschweig 38106, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5393-2413","affiliations":[{"raw_affiliation_string":"Braunschweig Integrated Centre of Systems Biology (BRICS), TU Braunschweig , Braunschweig 38106, Germany","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Division Data Science in Biomedicine, Peter L. Reichertz Institute for Medical Informatics of Technische Universit\u00e4t Braunschweig and Hannover Medical School , Braunschweig 38106, Germany","institution_ids":["https://openalex.org/I34809795","https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035928806","display_name":"Markus List","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus List","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany"],"raw_orcid":"https://orcid.org/0000-0002-0941-4168","affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065212442","display_name":"Olga Tsoy","orcid":"https://orcid.org/0000-0002-7592-2080"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Olga Tsoy","raw_affiliation_strings":["Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Computational Systems Biology, University of Hamburg, Notkestrasse 9 , Hamburg 22607, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5065212442"],"corresponding_institution_ids":["https://openalex.org/I159176309"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6264,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.643086,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.12950000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.12950000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.09669999778270721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.07559999823570251,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/course","display_name":"Course (navigation)","score":0.6786046624183655},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6468173265457153},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4512554407119751},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4155375063419342},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3885965049266815},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33937203884124756},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17615047097206116},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09082099795341492}],"concepts":[{"id":"https://openalex.org/C2777552389","wikidata":"https://www.wikidata.org/wiki/Q1962728","display_name":"Course (navigation)","level":2,"score":0.6786046624183655},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6468173265457153},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4512554407119751},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4155375063419342},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3885965049266815},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33937203884124756},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17615047097206116},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09082099795341492},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btac846","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac846","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac846/48599779/btac846.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36579860","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36579860","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:sdu.dk:openaire_cris_publications/e524feb9-a5f9-44f1-8689-f9538fd7bd92","is_oa":true,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/e524feb9-a5f9-44f1-8689-f9538fd7bd92","pdf_url":"https://findresearcher.sdu.dk/ws/files/219030861/btac846.pdf","source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lio, C T, Grabert, G, Louadi, Z, Fenn, A, Baumbach, J, Kacprowski, T, List, M & Tsoy, O 2023, 'Systematic analysis of alternative splicing in time course data using Spycone', Bioinformatics, vol. 39, no. 1, btac846. https://doi.org/10.1093/bioinformatics/btac846","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9831059","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9831059","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1728978","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1728978","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1775640","is_oa":true,"landing_page_url":"https://mediatum.ub.tum.de/1775640","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:sdu.dk:openaire/e524feb9-a5f9-44f1-8689-f9538fd7bd92","is_oa":true,"landing_page_url":"https://portal.findresearcher.sdu.dk/files/219030861/btac846.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lio, C T, Grabert, G, Louadi, Z, Fenn, A, Baumbach, J, Kacprowski, T, List, M & Tsoy, O 2023, 'Systematic analysis of alternative splicing in time course data using Spycone', Bioinformatics, vol. 39, no. 1, btac846. https://doi.org/10.1093/bioinformatics/btac846","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac846","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac846","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac846/48599779/btac846.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1832291857","display_name":null,"funder_award_id":"01ZX2208A*","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5319977054","display_name":null,"funder_award_id":"01ZX1908A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6492216678","display_name":null,"funder_award_id":"01ZX1910D","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8896609727","display_name":null,"funder_award_id":"031L0287B","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4313262010.pdf","grobid_xml":"https://content.openalex.org/works/W4313262010.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W1977556410","https://openalex.org/W1989277387","https://openalex.org/W1998871699","https://openalex.org/W2001504871","https://openalex.org/W2031616673","https://openalex.org/W2041998806","https://openalex.org/W2083620785","https://openalex.org/W2100989502","https://openalex.org/W2110256992","https://openalex.org/W2114850508","https://openalex.org/W2131271579","https://openalex.org/W2142676859","https://openalex.org/W2156628505","https://openalex.org/W2160642098","https://openalex.org/W2406749933","https://openalex.org/W2515822248","https://openalex.org/W2592811885","https://openalex.org/W2624572223","https://openalex.org/W2651264916","https://openalex.org/W2887117829","https://openalex.org/W2930186766","https://openalex.org/W2944545583","https://openalex.org/W2949317881","https://openalex.org/W2951539817","https://openalex.org/W2952976216","https://openalex.org/W2980453962","https://openalex.org/W2988341280","https://openalex.org/W2997591727","https://openalex.org/W3005049484","https://openalex.org/W3027570368","https://openalex.org/W3039352388","https://openalex.org/W3047381018","https://openalex.org/W3047880613","https://openalex.org/W3083675923","https://openalex.org/W3093053585","https://openalex.org/W3095583226","https://openalex.org/W3112865673","https://openalex.org/W3120538059","https://openalex.org/W3121786075","https://openalex.org/W3128962620","https://openalex.org/W3135328714","https://openalex.org/W3135408003","https://openalex.org/W3141934318","https://openalex.org/W3143497192","https://openalex.org/W3174593894","https://openalex.org/W3177828909","https://openalex.org/W3191892183","https://openalex.org/W3194575560","https://openalex.org/W3195422797","https://openalex.org/W3198918001","https://openalex.org/W3201493492","https://openalex.org/W3216358634","https://openalex.org/W4200141840","https://openalex.org/W4200500230","https://openalex.org/W4200548904","https://openalex.org/W4231254854","https://openalex.org/W6644682428","https://openalex.org/W6675354045","https://openalex.org/W6683118431","https://openalex.org/W6761063184","https://openalex.org/W6769238566","https://openalex.org/W6779988842","https://openalex.org/W6781770815","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W4318717247","https://openalex.org/W2267656092","https://openalex.org/W2317874921","https://openalex.org/W2736755255","https://openalex.org/W4362648715","https://openalex.org/W2009385780","https://openalex.org/W3082623308","https://openalex.org/W3120503679","https://openalex.org/W2359390960","https://openalex.org/W2238501609"],"abstract_inverted_index":{"MOTIVATION:":[0],"During":[1],"disease":[2],"progression":[3],"or":[4],"organism":[5],"development,":[6],"alternative":[7,22,35],"splicing":[8,23],"may":[9],"lead":[10],"to":[11],"isoform":[12],"switches":[13],"that":[14],"demonstrate":[15,69],"similar":[16],"temporal":[17],"patterns":[18],"and":[19,57,64,76,107],"reflect":[20],"the":[21,70,102,108],"co-regulation":[24],"of":[25,72,79,97],"such":[26,61],"genes.":[27],"Tools":[28],"for":[29,45],"dynamic":[30],"process":[31],"analysis":[32,60],"usually":[33],"neglect":[34],"splicing.":[36],"RESULTS:":[37],"Here,":[38],"we":[39],"propose":[40],"Spycone,":[41],"a":[42,52,91],"splicing-aware":[43],"framework":[44],"time":[46],"course":[47],"data":[48,78,115],"analysis.":[49],"Spycone":[50,73,86,98],"exploits":[51],"novel":[53],"IS":[54],"detection":[55],"algorithm":[56],"offers":[58],"downstream":[59],"as":[62,90],"network":[63],"gene":[65],"set":[66],"enrichment.":[67],"We":[68],"performance":[71],"using":[74],"simulated":[75],"real-world":[77],"SARS-CoV-2":[80],"infection.":[81],"AVAILABILITY":[82],"AND":[83],"IMPLEMENTATION:":[84],"The":[85,94],"package":[87],"is":[88,99],"available":[89,100,117],"PyPI":[92],"package.":[93],"source":[95],"code":[96],"under":[101],"GPLv3":[103],"license":[104],"at":[105,110,118],"https://github.com/yollct/spycone":[106],"documentation":[109],"https://spycone.readthedocs.io/en/latest/.":[111],"SUPPLEMENTARY":[112],"INFORMATION:":[113],"Supplementary":[114],"are":[116],"Bioinformatics":[119],"online.":[120]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
