{"id":"https://openalex.org/W4313261769","doi":"https://doi.org/10.1093/bioinformatics/btac844","title":"PRAWNS: compact pan-genomic features for whole-genome population genomics","display_name":"PRAWNS: compact pan-genomic features for whole-genome population genomics","publication_year":2022,"publication_date":"2022-12-28","ids":{"openalex":"https://openalex.org/W4313261769","doi":"https://doi.org/10.1093/bioinformatics/btac844","pmid":"https://pubmed.ncbi.nlm.nih.gov/36579850"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac844","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac844","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac844/48514090/btac844.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac844/48514090/btac844.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050677652","display_name":"Kiran Javkar","orcid":"https://orcid.org/0000-0003-1638-6625"},"institutions":[{"id":"https://openalex.org/I1285792802","display_name":"Center for Food Safety and Applied Nutrition","ror":"https://ror.org/05hzdft06","country_code":"US","type":"facility","lineage":["https://openalex.org/I1285792802","https://openalex.org/I1299022934","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kiran Javkar","raw_affiliation_strings":["Department of Computer Science, University of Maryland , College Park, MD 20742, USA","Joint Institute for Food Safety and Applied Nutrition, University of Maryland , College Park, MD 20740, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Maryland , College Park, MD 20742, USA","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"Joint Institute for Food Safety and Applied Nutrition, University of Maryland , College Park, MD 20740, USA","institution_ids":["https://openalex.org/I1285792802","https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037593913","display_name":"Hugh Rand","orcid":null},"institutions":[{"id":"https://openalex.org/I1285792802","display_name":"Center for Food Safety and Applied Nutrition","ror":"https://ror.org/05hzdft06","country_code":"US","type":"facility","lineage":["https://openalex.org/I1285792802","https://openalex.org/I1299022934","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hugh Rand","raw_affiliation_strings":["Center for Food Safety and Applied Nutrition, United States Food and Drug Administration , College Park, MD 20740, USA"],"affiliations":[{"raw_affiliation_string":"Center for Food Safety and Applied Nutrition, United States Food and Drug Administration , College Park, MD 20740, USA","institution_ids":["https://openalex.org/I1285792802","https://openalex.org/I1320320070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047193176","display_name":"Errol Strain","orcid":"https://orcid.org/0000-0003-2346-3668"},"institutions":[{"id":"https://openalex.org/I1319408584","display_name":"Center for Veterinary Medicine","ror":"https://ror.org/02y55wr53","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1319408584","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Errol Strain","raw_affiliation_strings":["Center for Veterinary Medicine, United States Food and Drug Administration , Laurel, MD 20708, USA"],"affiliations":[{"raw_affiliation_string":"Center for Veterinary Medicine, United States Food and Drug Administration , Laurel, MD 20708, USA","institution_ids":["https://openalex.org/I1319408584","https://openalex.org/I1320320070"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064979917","display_name":"Mihai Pop","orcid":"https://orcid.org/0000-0001-9617-5304"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mihai Pop","raw_affiliation_strings":["Department of Computer Science, University of Maryland , College Park, MD 20742, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Maryland , College Park, MD 20742, USA","institution_ids":["https://openalex.org/I66946132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5064979917"],"corresponding_institution_ids":["https://openalex.org/I66946132"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.26,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.5340781,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6709239482879639},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.609235405921936},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5625823140144348},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5025105476379395},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.47286462783813477},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.43515902757644653},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4139474332332611},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35063374042510986},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31727170944213867},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1908431351184845},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15388599038124084},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09219115972518921}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6709239482879639},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.609235405921936},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5625823140144348},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5025105476379395},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.47286462783813477},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.43515902757644653},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4139474332332611},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35063374042510986},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31727170944213867},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1908431351184845},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15388599038124084},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09219115972518921},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac844","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac844","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac844/48514090/btac844.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36579850","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36579850","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825322","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825322","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac844","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac844","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac844/48514090/btac844.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4313261769.pdf","grobid_xml":"https://content.openalex.org/works/W4313261769.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W26641785","https://openalex.org/W1162253361","https://openalex.org/W1991330646","https://openalex.org/W2029702456","https://openalex.org/W2097306188","https://openalex.org/W2117207428","https://openalex.org/W2120902911","https://openalex.org/W2122673596","https://openalex.org/W2125456570","https://openalex.org/W2127901812","https://openalex.org/W2146341019","https://openalex.org/W2150550043","https://openalex.org/W2152331922","https://openalex.org/W2164786886","https://openalex.org/W2166825456","https://openalex.org/W2339332745","https://openalex.org/W2575750030","https://openalex.org/W2739380133","https://openalex.org/W2784788330","https://openalex.org/W2785555626","https://openalex.org/W2807731504","https://openalex.org/W2809878000","https://openalex.org/W2909270764","https://openalex.org/W2949477823","https://openalex.org/W2950417030","https://openalex.org/W2955692928","https://openalex.org/W2963158913","https://openalex.org/W2969327028","https://openalex.org/W2982531601","https://openalex.org/W2997069256","https://openalex.org/W3005670610","https://openalex.org/W3111607156","https://openalex.org/W3125998537","https://openalex.org/W3164550201","https://openalex.org/W3202258817","https://openalex.org/W4205868410","https://openalex.org/W4225728461","https://openalex.org/W4229699985","https://openalex.org/W4377077039","https://openalex.org/W6703752416","https://openalex.org/W6751341652","https://openalex.org/W6768553925","https://openalex.org/W6769556952"],"related_works":["https://openalex.org/W2487162673","https://openalex.org/W2942366970","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W4372354731","https://openalex.org/W2562400057","https://openalex.org/W1692008701","https://openalex.org/W2597588799","https://openalex.org/W4360593462","https://openalex.org/W2053972265"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
