{"id":"https://openalex.org/W4313261843","doi":"https://doi.org/10.1093/bioinformatics/btac843","title":"Large-scale prediction of adverse drug reactions-related proteins with network embedding","display_name":"Large-scale prediction of adverse drug reactions-related proteins with network embedding","publication_year":2022,"publication_date":"2022-12-28","ids":{"openalex":"https://openalex.org/W4313261843","doi":"https://doi.org/10.1093/bioinformatics/btac843","pmid":"https://pubmed.ncbi.nlm.nih.gov/36579854"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac843","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac843","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac843/48521771/btac843.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac843/48521771/btac843.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071471788","display_name":"Jaesub Park","orcid":"https://orcid.org/0000-0002-4905-5980"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaesub Park","raw_affiliation_strings":["Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea"],"raw_orcid":"https://orcid.org/0000-0002-4905-5980","affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea","institution_ids":["https://openalex.org/I157485424","https://openalex.org/I4210101891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101585257","display_name":"Sang-Yeon Lee","orcid":"https://orcid.org/0000-0002-3260-4285"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sangyeon Lee","raw_affiliation_strings":["Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea"],"raw_orcid":"https://orcid.org/0000-0002-3260-4285","affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea","institution_ids":["https://openalex.org/I157485424","https://openalex.org/I4210101891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089505182","display_name":"Kwansoo Kim","orcid":"https://orcid.org/0000-0002-1951-8921"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kwansoo Kim","raw_affiliation_strings":["Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea"],"raw_orcid":"https://orcid.org/0000-0002-1951-8921","affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea","institution_ids":["https://openalex.org/I157485424","https://openalex.org/I4210101891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071478283","display_name":"Jaegyun Jung","orcid":"https://orcid.org/0000-0002-3222-2965"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaegyun Jung","raw_affiliation_strings":["Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea"],"raw_orcid":"https://orcid.org/0000-0002-3222-2965","affiliations":[{"raw_affiliation_string":"Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037879375","display_name":"Doheon Lee","orcid":"https://orcid.org/0000-0001-9070-4316"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]},{"id":"https://openalex.org/I4210101891","display_name":"Korea Institute of Brain Science","ror":"https://ror.org/017stnw60","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210101891"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Doheon Lee","raw_affiliation_strings":["Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea"],"raw_orcid":"https://orcid.org/0000-0001-9070-4316","affiliations":[{"raw_affiliation_string":"Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology , Daejeon 34141, South Korea","institution_ids":["https://openalex.org/I157485424","https://openalex.org/I4210101891"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5037879375"],"corresponding_institution_ids":["https://openalex.org/I157485424","https://openalex.org/I4210101891"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.4585,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.84229109,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8870999813079834,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8870999813079834,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.036400001496076584,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.009600000455975533,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6002254486083984},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5531939268112183},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5463271141052246},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5283045768737793},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.46255531907081604},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.46097245812416077},{"id":"https://openalex.org/keywords/drug-reaction","display_name":"Drug reaction","score":0.42679983377456665},{"id":"https://openalex.org/keywords/predictive-value","display_name":"Predictive value","score":0.4239954948425293},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.4216427803039551},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34939271211624146},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2688559293746948},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2620060443878174},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.22480827569961548},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.07090464234352112}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6002254486083984},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5531939268112183},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5463271141052246},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5283045768737793},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.46255531907081604},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.46097245812416077},{"id":"https://openalex.org/C2993432071","wikidata":"https://www.wikidata.org/wiki/Q45959","display_name":"Drug reaction","level":3,"score":0.42679983377456665},{"id":"https://openalex.org/C3019719930","wikidata":"https://www.wikidata.org/wiki/Q3910099","display_name":"Predictive value","level":2,"score":0.4239954948425293},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.4216427803039551},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34939271211624146},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2688559293746948},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2620060443878174},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.22480827569961548},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.07090464234352112},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac843","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac843","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac843/48521771/btac843.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36579854","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36579854","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825773","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825773","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac843","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac843","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac843/48521771/btac843.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1539403009","https://openalex.org/W1581615324","https://openalex.org/W1663154925","https://openalex.org/W1866331913","https://openalex.org/W1940210873","https://openalex.org/W1966446944","https://openalex.org/W1969088397","https://openalex.org/W1971234129","https://openalex.org/W1971387816","https://openalex.org/W1973565160","https://openalex.org/W1975148876","https://openalex.org/W1979700304","https://openalex.org/W1982438076","https://openalex.org/W2012719659","https://openalex.org/W2018453465","https://openalex.org/W2051473009","https://openalex.org/W2065876632","https://openalex.org/W2085752173","https://openalex.org/W2085774451","https://openalex.org/W2087704546","https://openalex.org/W2090816637","https://openalex.org/W2111404167","https://openalex.org/W2117452133","https://openalex.org/W2136725427","https://openalex.org/W2137195100","https://openalex.org/W2143943547","https://openalex.org/W2145578524","https://openalex.org/W2148561647","https://openalex.org/W2148598424","https://openalex.org/W2153380226","https://openalex.org/W2156023253","https://openalex.org/W2236361713","https://openalex.org/W2294516783","https://openalex.org/W2331786215","https://openalex.org/W2333032581","https://openalex.org/W2345356016","https://openalex.org/W2387462954","https://openalex.org/W2546666099","https://openalex.org/W2602808749","https://openalex.org/W2603915173","https://openalex.org/W2624968853","https://openalex.org/W2761739829","https://openalex.org/W2900758217","https://openalex.org/W2904397417","https://openalex.org/W2962756421","https://openalex.org/W2977707586","https://openalex.org/W2995180441","https://openalex.org/W3007489417","https://openalex.org/W3084482269","https://openalex.org/W3107527779","https://openalex.org/W3113781116","https://openalex.org/W3161787125","https://openalex.org/W3206559936","https://openalex.org/W4243829886","https://openalex.org/W4285494123","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W3173606202","https://openalex.org/W3110381201","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W1531601525","https://openalex.org/W2378211422","https://openalex.org/W178231042","https://openalex.org/W2360028903","https://openalex.org/W4280543773"],"abstract_inverted_index":{"MOTIVATION:":[0],"Adverse":[1],"drug":[2,10,30],"reactions":[3],"(ADRs)":[4],"are":[5,18,193,243],"a":[6,36,70,86,99,106,172],"major":[7],"issue":[8],"in":[9,46,120,191],"development":[11],"and":[12,209,232],"clinical":[13],"pharmacology.":[14],"As":[15],"most":[16,185],"ADRs":[17,34,190,208,216],"caused":[19],"by":[20,195],"unintended":[21],"activity":[22],"at":[23,229,245],"off-targets":[24],"of":[25,29,49,66,114,126,136,151,215],"drugs,":[26],"the":[27,44,47,64,121,130,134,205,213],"identification":[28,65],"targets":[31],"responsible":[32],"for":[33,39,117,148,161],"becomes":[35],"key":[37],"process":[38],"resolving":[40],"ADRs.":[41],"Recently,":[42],"with":[43,73,93,105],"increase":[45],"number":[48],"ADR-related":[50,67,90,115,138,153,162],"data":[51,242],"sources,":[52],"several":[53],"computational":[54,87],"methodologies":[55],"have":[56],"been":[57],"proposed":[58,174],"to":[59,110,132,140,171,189,211,218,235],"analyze":[60],"ADR-protein":[61],"relations.":[62],"However,":[63],"proteins":[68,116,119,139,163,187],"on":[69],"large":[71],"scale":[72],"high":[74,149],"reliability":[75],"remains":[76],"an":[77],"important":[78],"challenge.":[79],"RESULTS:":[80],"In":[81],"this":[82],"article,":[83],"we":[84],"suggest":[85],"approach,":[88],"Large-scale":[89],"Proteins":[91],"Identification":[92],"Network":[94],"Embedding":[95],"(LAPINE).":[96],"LAPINE":[97,156,192,199],"combines":[98],"novel":[100],"concept":[101],"called":[102],"single-target":[103],"compound":[104],"network":[107],"embedding":[108],"technique":[109],"enable":[111],"large-scale":[112],"prediction":[113],"any":[118],"protein-protein":[122],"interaction":[123],"network.":[124],"Analysis":[125],"benchmark":[127],"datasets":[128],"confirms":[129],"need":[131],"expand":[133],"scope":[135],"potential":[137],"be":[141],"analyzed,":[142],"as":[143,145],"well":[144],"LAPINE's":[146],"capability":[147],"recovery":[150],"known":[152],"proteins.":[154],"Moreover,":[155],"provides":[157],"more":[158],"reliable":[159,202],"predictions":[160],"(Value-added":[164],"positive":[165],"predictive":[166,186],"value":[167],"=":[168],"0.12),":[169],"compared":[170],"previously":[173],"method":[175],"(P":[176],"<":[177],"0.001).":[178],"Furthermore,":[179],"two":[180],"case":[181],"studies":[182],"show":[183],"that":[184],"related":[188],"supported":[194],"literature":[196],"evidence.":[197],"Overall,":[198],"can":[200],"provide":[201],"insights":[203],"into":[204],"relationship":[206],"between":[207],"proteomes":[210],"understand":[212],"mechanism":[214],"leading":[217],"their":[219],"prevention.":[220],"AVAILABILITY":[221],"AND":[222],"IMPLEMENTATION:":[223],"The":[224],"source":[225],"code":[226],"is":[227],"available":[228,244],"GitHub":[230],"(https://github.com/rupinas/LAPINE)":[231],"Figshare":[233],"(https://figshare.com/articles/software/LAPINE/21750245)":[234],"facilitate":[236],"its":[237],"use.":[238],"SUPPLEMENTARY":[239],"INFORMATION:":[240],"Supplementary":[241],"Bioinformatics":[246],"online.":[247]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
