{"id":"https://openalex.org/W4313261772","doi":"https://doi.org/10.1093/bioinformatics/btac837","title":"DFinder: a novel end-to-end graph embedding-based method to identify drug\u2013food interactions","display_name":"DFinder: a novel end-to-end graph embedding-based method to identify drug\u2013food interactions","publication_year":2022,"publication_date":"2022-12-28","ids":{"openalex":"https://openalex.org/W4313261772","doi":"https://doi.org/10.1093/bioinformatics/btac837","pmid":"https://pubmed.ncbi.nlm.nih.gov/36579885"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac837","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac837","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac837/48573402/btac837.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac837/48573402/btac837.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100453553","display_name":"Tao Wang","orcid":"https://orcid.org/0000-0002-5728-6463"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Wang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China"],"raw_orcid":"https://orcid.org/0000-0002-5728-6463","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014402416","display_name":"Jinjin Yang","orcid":"https://orcid.org/0000-0001-9413-340X"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinjin Yang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China"],"raw_orcid":"https://orcid.org/0000-0001-9413-340X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053517207","display_name":"Yifu Xiao","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifu Xiao","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100723965","display_name":"Jingru Wang","orcid":"https://orcid.org/0000-0001-6196-7213"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingru Wang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040442791","display_name":"Yuxian Wang","orcid":"https://orcid.org/0000-0002-6834-9706"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxian Wang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China"],"raw_orcid":"https://orcid.org/0000-0002-6834-9706","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087485700","display_name":"Xi Zeng","orcid":"https://orcid.org/0000-0002-5355-0773"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xi Zeng","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026250850","display_name":"Yongtian Wang","orcid":"https://orcid.org/0000-0001-9422-0888"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongtian Wang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084343474","display_name":"Jiajie Peng","orcid":"https://orcid.org/0000-0002-3857-7927"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiajie Peng","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China"],"raw_orcid":"https://orcid.org/0000-0002-3857-7927","affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, Ministry of Industry and Information Technology , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5084343474"],"corresponding_institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.88,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.94513764,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8030999898910522,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8030999898910522,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.03550000116229057,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.022600000724196434,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.8332126140594482},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.753165602684021},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5532643795013428},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5506219863891602},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4856609106063843},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4618690311908722},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4579883813858032},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4484538733959198},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4470125734806061},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4245138168334961},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3971661627292633},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3761080801486969},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17712709307670593},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.1397590935230255}],"concepts":[{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.8332126140594482},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.753165602684021},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5532643795013428},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5506219863891602},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4856609106063843},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4618690311908722},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4579883813858032},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4484538733959198},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4470125734806061},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4245138168334961},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3971661627292633},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3761080801486969},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17712709307670593},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.1397590935230255},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018565","descriptor_name":"Food-Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018565","descriptor_name":"Food-Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018565","descriptor_name":"Food-Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac837","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac837","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac837/48573402/btac837.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36579885","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36579885","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9828147","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9828147","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac837","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac837","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac837/48573402/btac837.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G3128057212","display_name":null,"funder_award_id":"62102319","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G535927982","display_name":null,"funder_award_id":"62072376","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1479780899","https://openalex.org/W1522301498","https://openalex.org/W1614298861","https://openalex.org/W1967752524","https://openalex.org/W1968761064","https://openalex.org/W1988678216","https://openalex.org/W2009313526","https://openalex.org/W2018968940","https://openalex.org/W2038106686","https://openalex.org/W2046007118","https://openalex.org/W2048697400","https://openalex.org/W2053039860","https://openalex.org/W2068779886","https://openalex.org/W2097308346","https://openalex.org/W2140310134","https://openalex.org/W2152392393","https://openalex.org/W2165125496","https://openalex.org/W2170146596","https://openalex.org/W2170189740","https://openalex.org/W2529996553","https://openalex.org/W2626256289","https://openalex.org/W2777416523","https://openalex.org/W2786016794","https://openalex.org/W2789308831","https://openalex.org/W2802200505","https://openalex.org/W2900569176","https://openalex.org/W2904828342","https://openalex.org/W2914721378","https://openalex.org/W2923682152","https://openalex.org/W2924922861","https://openalex.org/W2937963363","https://openalex.org/W2948035163","https://openalex.org/W2950342274","https://openalex.org/W2950834624","https://openalex.org/W2962756421","https://openalex.org/W2963169753","https://openalex.org/W2977707586","https://openalex.org/W2991847337","https://openalex.org/W3004423099","https://openalex.org/W3021338900","https://openalex.org/W3022603009","https://openalex.org/W3039265083","https://openalex.org/W3088680691","https://openalex.org/W3095479837","https://openalex.org/W3098269892","https://openalex.org/W3126516421","https://openalex.org/W3157889929","https://openalex.org/W3198168376","https://openalex.org/W6631190155","https://openalex.org/W6636510571","https://openalex.org/W6746002097"],"related_works":["https://openalex.org/W2365158734","https://openalex.org/W2009313526","https://openalex.org/W2465211533","https://openalex.org/W2157969515","https://openalex.org/W2137827821","https://openalex.org/W129624489","https://openalex.org/W4388615774","https://openalex.org/W4387804095","https://openalex.org/W2137052779","https://openalex.org/W2767891136"],"abstract_inverted_index":{"MOTIVATION:":[0],"Drug-food":[1],"interactions":[2],"(DFIs)":[3],"occur":[4],"when":[5],"some":[6],"constituents":[7],"of":[8,15,44,70,80,83,88,177],"food":[9,75,89,112,180],"affect":[10],"the":[11,16,42,68,111,175,195,213],"bioaccessibility":[12],"or":[13],"efficacy":[14],"drug":[17,21],"by":[18],"involving":[19],"in":[20,33,47],"pharmacodynamic":[22],"and/or":[23],"pharmacokinetic":[24],"processes.":[25],"Many":[26],"computational":[27,45,55,107],"methods":[28,46],"have":[29],"achieved":[30],"remarkable":[31],"results":[32,219],"link":[34],"prediction":[35],"tasks":[36],"between":[37],"biological":[38],"entities,":[39],"which":[40],"show":[41],"potential":[43],"discovering":[48],"novel":[49,154],"DFIs.":[50,117,163],"However,":[51],"there":[52],"are":[53,148,243],"few":[54],"approaches":[56,108],"that":[57,221],"pay":[58],"attention":[59],"to":[60,67,93,104,132,161,173,193,208],"DFI":[61,71,125,146],"identification.":[62],"This":[63],"is":[64,76,102,235],"mainly":[65],"due":[66],"lack":[69],"data.":[72],"In":[73,119,182,199],"addition,":[74],"generally":[77],"made":[78],"up":[79],"a":[81,153,187,204],"variety":[82],"chemical":[84],"substances.":[85],"The":[86,217,232],"complexity":[87],"makes":[90],"it":[91,101],"difficult":[92],"generate":[94],"accurate":[95],"feature":[96,113,200],"representations":[97,176],"for":[98,109],"food.":[99],"Therefore,":[100],"urgent":[103],"develop":[105],"effective":[106],"learning":[110],"representation":[114],"and":[115,129,138,169,179],"predicting":[116],"RESULTS:":[118],"this":[120],"article,":[121],"we":[122,151,185,202],"first":[123],"collect":[124],"data":[126,242],"from":[127,212],"DrugBank":[128],"PubMed,":[130],"respectively,":[131],"construct":[133],"two":[134,143,145],"datasets,":[135,144],"named":[136,159],"DrugBank-DFI":[137],"PubMed-DFI.":[139],"Based":[140],"on":[141],"these":[142],"networks":[147],"constructed.":[149],"Then,":[150],"propose":[152],"end-to-end":[155],"graph":[156,189],"embedding-based":[157],"method":[158,192],"DFinder":[160,164,222],"identify":[162],"combines":[165],"node":[166,215],"attribute":[167,210],"features":[168,172,211],"topological":[170,196],"structure":[171,197],"learn":[174,194],"drugs":[178],"constituents.":[181],"topology":[183],"space,":[184,201],"adopt":[186],"simplified":[188],"convolution":[190],"network-based":[191],"features.":[198],"use":[203],"deep":[205],"neural":[206],"network":[207],"extract":[209],"original":[214],"attributes.":[216],"evaluation":[218],"indicate":[220],"performs":[223],"better":[224],"than":[225],"other":[226],"baseline":[227],"methods.":[228],"AVAILABILITY":[229],"AND":[230],"IMPLEMENTATION:":[231],"source":[233],"code":[234],"available":[236,244],"at":[237,245],"https://github.com/23AIBox/23AIBox-DFinder.":[238],"SUPPLEMENTARY":[239],"INFORMATION:":[240],"Supplementary":[241],"Bioinformatics":[246],"online.":[247]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-14T08:27:34.040176","created_date":"2025-10-10T00:00:00"}
