{"id":"https://openalex.org/W4312114021","doi":"https://doi.org/10.1093/bioinformatics/btac830","title":"igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV)","display_name":"igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV)","publication_year":2022,"publication_date":"2022-12-22","ids":{"openalex":"https://openalex.org/W4312114021","doi":"https://doi.org/10.1093/bioinformatics/btac830","pmid":"https://pubmed.ncbi.nlm.nih.gov/36562559"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac830","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac830","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac830/48514060/btac830.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac830/48514060/btac830.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014218807","display_name":"James Robinson","orcid":"https://orcid.org/0000-0002-2187-5944"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James T Robinson","raw_affiliation_strings":["Department of Medicine, University of California San Diego , La Jolla, CA 92093, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of California San Diego , La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033125816","display_name":"Helga Thorvaldsd\u00f3ttir","orcid":null},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Helga Thorvaldsdottir","raw_affiliation_strings":["Broad Institute of MIT and Harvard , Cambridge, MA 02142, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard , Cambridge, MA 02142, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063505542","display_name":"Douglass Turner","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Douglass Turner","raw_affiliation_strings":["Department of Medicine, University of California San Diego , La Jolla, CA 92093, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of California San Diego , La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077622597","display_name":"Jill P. Mesirov","orcid":"https://orcid.org/0000-0002-9755-2818"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jill P Mesirov","raw_affiliation_strings":["Department of Medicine, University of California San Diego , La Jolla, CA 92093, USA","Moores Cancer Center, University of California San Diego La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of California San Diego , La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Moores Cancer Center, University of California San Diego La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5014218807"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":35.3825,"has_fulltext":true,"cited_by_count":541,"citation_normalized_percentile":{"value":0.99905824,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.30640000104904175,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.30640000104904175,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.14020000398159027,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.050999999046325684,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.7594414949417114},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.7405866384506226},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.7386105060577393},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7237470746040344},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.6971206665039062},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.6180418133735657},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.5970325469970703},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.46318694949150085},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42398735880851746},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3256954252719879},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.30300790071487427},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20706796646118164},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.06251347064971924}],"concepts":[{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.7594414949417114},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.7405866384506226},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.7386105060577393},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7237470746040344},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.6971206665039062},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.6180418133735657},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.5970325469970703},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.46318694949150085},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42398735880851746},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3256954252719879},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.30300790071487427},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20706796646118164},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.06251347064971924}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac830","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac830","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac830/48514060/btac830.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36562559","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36562559","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825295","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825295","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac830","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac830","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac830/48514060/btac830.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G1296908991","display_name":"The Integrative Genomics Viewer (IGV): visualization supporting cancer research","funder_award_id":"5u24ca210004-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2618143677","display_name":null,"funder_award_id":"U24 CA258406","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G573639371","display_name":"The Integrative Genomics Viewer (IGV) for Cancer Research","funder_award_id":"5u24ca258406-04","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6135114476","display_name":null,"funder_award_id":"U24 CA210004","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4312114021.pdf","grobid_xml":"https://content.openalex.org/works/W4312114021.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2021341670","https://openalex.org/W2105114815","https://openalex.org/W2117131162","https://openalex.org/W2128016314","https://openalex.org/W2131581981","https://openalex.org/W2336957559","https://openalex.org/W2765185461"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2546377002","https://openalex.org/W4285209474","https://openalex.org/W22571951","https://openalex.org/W2046541848","https://openalex.org/W2791776396","https://openalex.org/W3081674575","https://openalex.org/W4287673983","https://openalex.org/W2113128227","https://openalex.org/W4311938462"],"abstract_inverted_index":{"SUMMARY:":[0],"igv.js":[1,54],"is":[2,67,83,90,103],"an":[3],"embeddable":[4],"JavaScript":[5,55],"implementation":[6],"of":[7,26],"the":[8,38,72,77,95],"Integrative":[9],"Genomics":[10],"Viewer":[11],"(IGV).":[12],"It":[13],"can":[14,57],"be":[15,58],"easily":[16],"dropped":[17],"into":[18],"any":[19],"web":[20,39],"page":[21],"with":[22,41],"a":[23],"single":[24],"line":[25],"code":[27,66,89],"and":[28,45],"has":[29],"no":[30,42,46],"external":[31],"dependencies.":[32],"The":[33,53,64,87],"viewer":[34],"runs":[35],"completely":[36],"in":[37],"browser,":[40],"backend":[43],"server":[44],"data":[47],"pre-processing":[48],"required.":[49],"AVAILABILITY":[50],"AND":[51],"IMPLEMENTATION:":[52],"component":[56],"installed":[59],"from":[60],"NPM":[61],"at":[62,69,85,92,105],"https://www.npmjs.com/package/igv.":[63],"source":[65,88],"available":[68,84,91,104],"https://github.com/igvteam/igv.js":[70],"under":[71,94],"MIT":[73,96],"open-source":[74,97],"license.":[75,98],"IGV-Web,":[76],"end-user":[78],"application":[79],"built":[80],"around":[81],"igv.js,":[82],"https://igv.org/app.":[86],"https://github.com/igvteam/igv-webapp":[93],"SUPPLEMENTARY":[99],"INFORMATION:":[100],"Supplementary":[101],"information":[102],"Bioinformatics":[106],"online.":[107]},"counts_by_year":[{"year":2026,"cited_by_count":92},{"year":2025,"cited_by_count":177},{"year":2024,"cited_by_count":173},{"year":2023,"cited_by_count":74},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":8}],"updated_date":"2026-08-13T07:04:57.449891","created_date":"2025-10-10T00:00:00"}
