{"id":"https://openalex.org/W4312195711","doi":"https://doi.org/10.1093/bioinformatics/btac820","title":"Attentive Variational Information Bottleneck for TCR\u2013peptide interaction prediction","display_name":"Attentive Variational Information Bottleneck for TCR\u2013peptide interaction prediction","publication_year":2022,"publication_date":"2022-12-23","ids":{"openalex":"https://openalex.org/W4312195711","doi":"https://doi.org/10.1093/bioinformatics/btac820","pmid":"https://pubmed.ncbi.nlm.nih.gov/36571499"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac820","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac820","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac820/48493569/btac820.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac820/48493569/btac820.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029581243","display_name":"Filippo Grazioli","orcid":"https://orcid.org/0000-0001-8888-133X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Filippo Grazioli","raw_affiliation_strings":["Biomedical AI Group, NEC Laboratories Europe , Heidelberg 69115, Germany"],"affiliations":[{"raw_affiliation_string":"Biomedical AI Group, NEC Laboratories Europe , Heidelberg 69115, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039885627","display_name":"Pierre Machart","orcid":"https://orcid.org/0000-0002-2646-3674"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pierre Machart","raw_affiliation_strings":["Biomedical AI Group, NEC Laboratories Europe , Heidelberg 69115, Germany"],"affiliations":[{"raw_affiliation_string":"Biomedical AI Group, NEC Laboratories Europe , Heidelberg 69115, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060013686","display_name":"Anja M\u00f6sch","orcid":"https://orcid.org/0000-0002-6008-0220"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anja M\u00f6sch","raw_affiliation_strings":["Biomedical AI Group, NEC Laboratories Europe , Heidelberg 69115, Germany"],"affiliations":[{"raw_affiliation_string":"Biomedical AI Group, NEC Laboratories Europe , Heidelberg 69115, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100399851","display_name":"Kai Li","orcid":"https://orcid.org/0000-0002-0810-2437"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kai Li","raw_affiliation_strings":["Machine Learning Department, NEC Laboratories America , Princeton, NJ 08540, USA"],"affiliations":[{"raw_affiliation_string":"Machine Learning Department, NEC Laboratories America , Princeton, NJ 08540, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034913299","display_name":"Leonardo V. Castorina","orcid":"https://orcid.org/0000-0002-4247-4883"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Leonardo V Castorina","raw_affiliation_strings":["School of Informatics, University of Edinburgh , Edinburgh EH8 9AB, UK"],"affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh , Edinburgh EH8 9AB, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076705834","display_name":"Nico Pfeifer","orcid":"https://orcid.org/0000-0002-4647-8566"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nico Pfeifer","raw_affiliation_strings":["Methods in Medical Informatics, Department of Computer Science, University of T\u00fcbingen , T\u00fcbingen 72076, Germany"],"affiliations":[{"raw_affiliation_string":"Methods in Medical Informatics, Department of Computer Science, University of T\u00fcbingen , T\u00fcbingen 72076, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065576006","display_name":"Martin Renqiang Min","orcid":"https://orcid.org/0000-0002-8563-6133"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Martin Renqiang Min","raw_affiliation_strings":["Machine Learning Department, NEC Laboratories America , Princeton, NJ 08540, USA"],"affiliations":[{"raw_affiliation_string":"Machine Learning Department, NEC Laboratories America , Princeton, NJ 08540, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5029581243","https://openalex.org/A5065576006"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.2997,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.79894585,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9732000231742859,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.9153555631637573},{"id":"https://openalex.org/keywords/information-bottleneck-method","display_name":"Information bottleneck method","score":0.8562651872634888},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.7392049431800842},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7011464238166809},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.55855792760849},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.45733410120010376},{"id":"https://openalex.org/keywords/t-cell-receptor","display_name":"T-cell receptor","score":0.4171298146247864},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39830678701400757},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3881790041923523},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.33920446038246155},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3245046138763428},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.14922237396240234},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13600975275039673},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1092788577079773},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.0782645046710968},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06848594546318054}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.9153555631637573},{"id":"https://openalex.org/C60008888","wikidata":"https://www.wikidata.org/wiki/Q6031013","display_name":"Information bottleneck method","level":3,"score":0.8562651872634888},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.7392049431800842},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7011464238166809},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.55855792760849},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.45733410120010376},{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.4171298146247864},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39830678701400757},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3881790041923523},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.33920446038246155},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3245046138763428},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.14922237396240234},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13600975275039673},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1092788577079773},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.0782645046710968},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06848594546318054},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.0},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac820","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac820","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac820/48493569/btac820.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36571499","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36571499","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825246","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825246","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac820","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac820","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac820/48493569/btac820.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4312195711.pdf","grobid_xml":"https://content.openalex.org/works/W4312195711.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1822028895","https://openalex.org/W1994108141","https://openalex.org/W2008472656","https://openalex.org/W2016899885","https://openalex.org/W2031011895","https://openalex.org/W2038702914","https://openalex.org/W2042964520","https://openalex.org/W2116064496","https://openalex.org/W2120518061","https://openalex.org/W2125732073","https://openalex.org/W2127525056","https://openalex.org/W2134610083","https://openalex.org/W2138477307","https://openalex.org/W2143210482","https://openalex.org/W2155994234","https://openalex.org/W2163660115","https://openalex.org/W2172811882","https://openalex.org/W2495101885","https://openalex.org/W2613978126","https://openalex.org/W2670890989","https://openalex.org/W2671261300","https://openalex.org/W2743893844","https://openalex.org/W2797967938","https://openalex.org/W2898389621","https://openalex.org/W2948058491","https://openalex.org/W2948089261","https://openalex.org/W2950230115","https://openalex.org/W2968803773","https://openalex.org/W2979330275","https://openalex.org/W2990308980","https://openalex.org/W2998313390","https://openalex.org/W3024570138","https://openalex.org/W3036326371","https://openalex.org/W3042910002","https://openalex.org/W3048782167","https://openalex.org/W3080758869","https://openalex.org/W3100445709","https://openalex.org/W3113525558","https://openalex.org/W3114324465","https://openalex.org/W3134285993","https://openalex.org/W3160420762","https://openalex.org/W3163602801","https://openalex.org/W3166730506","https://openalex.org/W3175719984","https://openalex.org/W3196626346","https://openalex.org/W3198134549","https://openalex.org/W4226011853","https://openalex.org/W4307166771","https://openalex.org/W4385245566","https://openalex.org/W6683052072","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W2622284819","https://openalex.org/W1504394672","https://openalex.org/W4386721405","https://openalex.org/W2381356463","https://openalex.org/W2996506326","https://openalex.org/W2179794820","https://openalex.org/W3088534631","https://openalex.org/W4386076014","https://openalex.org/W2916723995","https://openalex.org/W2349869535"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
