{"id":"https://openalex.org/W4310571972","doi":"https://doi.org/10.1093/bioinformatics/btac771","title":"EDIR: exome database of interspersed repeats","display_name":"EDIR: exome database of interspersed repeats","publication_year":2022,"publication_date":"2022-12-01","ids":{"openalex":"https://openalex.org/W4310571972","doi":"https://doi.org/10.1093/bioinformatics/btac771","pmid":"https://pubmed.ncbi.nlm.nih.gov/36453866"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac771","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac771","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac771/48448899/btac771.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac771/48448899/btac771.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066130709","display_name":"Laura D T Vo Ngoc","orcid":null},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]},{"id":"https://openalex.org/I4210126764","display_name":"Universitair Ziekenhuis Brussel","ror":"https://ror.org/038f7y939","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I4210126764"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Laura D T Vo Ngoc","raw_affiliation_strings":["Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium","institution_ids":["https://openalex.org/I13469542","https://openalex.org/I4210126764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041015402","display_name":"Randy Osei","orcid":"https://orcid.org/0000-0003-3620-4518"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]},{"id":"https://openalex.org/I4210126764","display_name":"Universitair Ziekenhuis Brussel","ror":"https://ror.org/038f7y939","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I4210126764"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Randy Osei","raw_affiliation_strings":["Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium","institution_ids":["https://openalex.org/I13469542","https://openalex.org/I4210126764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050685990","display_name":"Katrin Dohr","orcid":"https://orcid.org/0000-0002-7196-1672"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Katrin Dohr","raw_affiliation_strings":["Department of Paediatrics and Adolescent Medicine, Research Unit of Analytical Mass Spectrometry, Cell Biology and Biochemistry of Inborn Errors of Metabolism , Graz 8010, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Paediatrics and Adolescent Medicine, Research Unit of Analytical Mass Spectrometry, Cell Biology and Biochemistry of Inborn Errors of Metabolism , Graz 8010, Austria","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058483070","display_name":"Catharina Olsen","orcid":"https://orcid.org/0000-0002-6193-2296"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]},{"id":"https://openalex.org/I4210126764","display_name":"Universitair Ziekenhuis Brussel","ror":"https://ror.org/038f7y939","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I4210126764"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Catharina Olsen","raw_affiliation_strings":["Brussels Interuniversity Genomics High Throughput Core (BRIGHTcore), VUB-ULB , Brussels 1090, Belgium","Interuniversity Institute of Bioinformatics in Brussels (IB)2, VUB-ULB , Brussels 1050, Belgium","Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Brussels Interuniversity Genomics High Throughput Core (BRIGHTcore), VUB-ULB , Brussels 1090, Belgium","institution_ids":[]},{"raw_affiliation_string":"Interuniversity Institute of Bioinformatics in Brussels (IB)2, VUB-ULB , Brussels 1050, Belgium","institution_ids":[]},{"raw_affiliation_string":"Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium","institution_ids":["https://openalex.org/I13469542","https://openalex.org/I4210126764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017437860","display_name":"Sara Seneca","orcid":"https://orcid.org/0000-0002-0853-9890"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]},{"id":"https://openalex.org/I4210126764","display_name":"Universitair Ziekenhuis Brussel","ror":"https://ror.org/038f7y939","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I4210126764"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sara Seneca","raw_affiliation_strings":["Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium","institution_ids":["https://openalex.org/I13469542","https://openalex.org/I4210126764"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018216972","display_name":"Alexander Gheldof","orcid":"https://orcid.org/0000-0002-8320-1961"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]},{"id":"https://openalex.org/I4210126764","display_name":"Universitair Ziekenhuis Brussel","ror":"https://ror.org/038f7y939","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I4210126764"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Alexander Gheldof","raw_affiliation_strings":["Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-8320-1961","affiliations":[{"raw_affiliation_string":"Vrije Universiteit Brussel (VUB), Universitair Ziekenhuis Brussel (UZ Brussel), Clinical Sciences, Research Group Reproduction and Genetics, Centre for Medical Genetics , Brussels 1090, Belgium","institution_ids":["https://openalex.org/I13469542","https://openalex.org/I4210126764"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5018216972"],"corresponding_institution_ids":["https://openalex.org/I13469542","https://openalex.org/I4210126764"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09403908,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.6744185090065002},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.6106634140014648},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6076308488845825},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.503574550151825},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.468315452337265},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4365718364715576},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.4311182200908661},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.4164109528064728},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4002300500869751},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36004066467285156},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3298785388469696},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.27677738666534424},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2349211573600769},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.1760508418083191}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.6744185090065002},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.6106634140014648},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6076308488845825},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.503574550151825},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.468315452337265},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4365718364715576},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.4311182200908661},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.4164109528064728},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4002300500869751},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36004066467285156},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3298785388469696},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.27677738666534424},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2349211573600769},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.1760508418083191}],"mesh":[{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac771","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac771","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac771/48448899/btac771.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36453866","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36453866","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:163509","is_oa":true,"landing_page_url":"https://biblio.vub.ac.be/vubir/(9e25c525-6abd-4c0d-a89b-550927600702).html","pdf_url":"https://biblio.vub.ac.be/vubirfiles/105570374/92410057.pdf","source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9805566","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9805566","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac771","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac771","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac771/48448899/btac771.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4027316045","display_name":"Wetenschappelijk Fonds Willy Gepts, Universitair Ziekenhuis Brussel","ror":null},{"id":"https://openalex.org/F4807819913","display_name":"Universitair Ziekenhuis Brussel","ror":"https://ror.org/038f7y939"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4310571972.pdf"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W2000151507","https://openalex.org/W2157716364","https://openalex.org/W2289509647","https://openalex.org/W2597545254","https://openalex.org/W2598882179","https://openalex.org/W2602808697","https://openalex.org/W2611004950","https://openalex.org/W2743448702","https://openalex.org/W2753297280","https://openalex.org/W2767622732","https://openalex.org/W2784255800","https://openalex.org/W2793359220","https://openalex.org/W2888816408","https://openalex.org/W2907407121","https://openalex.org/W2930250096","https://openalex.org/W2969642842","https://openalex.org/W3014463300","https://openalex.org/W3028537395","https://openalex.org/W3033818381","https://openalex.org/W3081891813","https://openalex.org/W3121095448","https://openalex.org/W3139168003","https://openalex.org/W3146967545","https://openalex.org/W3216905935","https://openalex.org/W6743027455","https://openalex.org/W6788826245"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2093932542","https://openalex.org/W2747931568","https://openalex.org/W2921090651","https://openalex.org/W2133055377"],"abstract_inverted_index":{"MOTIVATION:":[0],"Intragenic":[1],"exonic":[2],"deletions":[3],"are":[4,12,151],"known":[5],"to":[6,8,22,100],"contribute":[7],"genetic":[9],"diseases":[10],"and":[11,71,131],"often":[13],"flanked":[14],"by":[15,60,66],"regions":[16],"of":[17,28,42,49,88,111],"homology.":[18],"RESULTS:":[19],"In":[20],"order":[21],"get":[23],"a":[24,33,67,80],"more":[25],"clear":[26],"view":[27],"these":[29,50],"interspersed":[30],"repeats":[31],"encompassing":[32],"coding":[34],"sequence,":[35],"we":[36],"have":[37],"developed":[38],"EDIR":[39,56,102,112,127,138],"(Exome":[40],"Database":[41],"Interspersed":[43],"Repeats)":[44],"which":[45],"contains":[46],"the":[47,53,84,92],"positions":[48],"structures":[51],"within":[52],"human":[54],"exome.":[55,93],"has":[57],"been":[58],"calculated":[59],"an":[61,76,117],"inductive":[62],"strategy,":[63],"rather":[64],"than":[65],"brute":[68],"force":[69],"approach":[70],"can":[72,103,113,140],"be":[73,104,114,141],"queried":[74,115],"through":[75],"R/Bioconductor":[77],"package":[78,124],"or":[79,145],"web":[81],"interface":[82],"allowing":[83],"per-gene":[85],"rapid":[86],"extraction":[87],"homology-flanked":[89],"sequences":[90],"throughout":[91],"AVAILABILITY":[94],"AND":[95],"IMPLEMENTATION:":[96],"The":[97,108,122,136],"code":[98],"used":[99],"compile":[101],"found":[105],"at":[106,120,153],"https://github.com/lauravongoc/EDIR.":[107],"full":[109,137],"dataset":[110,139],"via":[116],"Rshiny":[118],"application":[119],"http://193.70.34.71:3857/edir/.":[121],"R":[123],"for":[125],"querying":[126],"is":[128,132],"called":[129],"'EDIRquery'":[130],"available":[133,152],"on":[134],"Bioconductor.":[135],"downloaded":[142],"from":[143],"https://osf.io/m3gvx/":[144],"http://193.70.34.71/EDIR.tar.gz.":[146],"SUPPLEMENTARY":[147],"INFORMATION:":[148],"Supplementary":[149],"data":[150],"Bioinformatics":[154],"online.":[155]},"counts_by_year":[],"updated_date":"2026-08-12T21:12:35.861297","created_date":"2022-12-12T00:00:00"}
