{"id":"https://openalex.org/W4310154254","doi":"https://doi.org/10.1093/bioinformatics/btac761","title":"Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease","display_name":"Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease","publication_year":2022,"publication_date":"2022-11-24","ids":{"openalex":"https://openalex.org/W4310154254","doi":"https://doi.org/10.1093/bioinformatics/btac761","pmid":"https://pubmed.ncbi.nlm.nih.gov/36440957"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac761","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac761","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac761/48448702/btac761.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac761/48448702/btac761.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042745262","display_name":"Xavier Didelot","orcid":"https://orcid.org/0000-0003-1885-500X"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Xavier Didelot","raw_affiliation_strings":["School of Life Sciences and Department of Statistics, University of Warwick , Coventry CV4 7AL, UK"],"raw_orcid":"https://orcid.org/0000-0003-1885-500X","affiliations":[{"raw_affiliation_string":"School of Life Sciences and Department of Statistics, University of Warwick , Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026925673","display_name":"David Helekal","orcid":"https://orcid.org/0000-0002-9319-7097"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Helekal","raw_affiliation_strings":["Centre for Doctoral Training in Mathematics for Real-World Systems, University of Warwick , Coventry CV4 7AL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Doctoral Training in Mathematics for Real-World Systems, University of Warwick , Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068968591","display_name":"Michelle Kendall","orcid":"https://orcid.org/0000-0001-7344-7071"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michelle Kendall","raw_affiliation_strings":["School of Life Sciences and Department of Statistics, University of Warwick , Coventry CV4 7AL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Department of Statistics, University of Warwick , Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031469755","display_name":"Paolo Ribeca","orcid":"https://orcid.org/0000-0001-5599-3933"},"institutions":[{"id":"https://openalex.org/I15477984","display_name":"James Hutton Institute","ror":"https://ror.org/03rzp5127","country_code":"GB","type":"funder","lineage":["https://openalex.org/I15477984"]},{"id":"https://openalex.org/I4210125655","display_name":"Biomathematics and Statistics Scotland","ror":"https://ror.org/03jwrz939","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210125655"]},{"id":"https://openalex.org/I4387153084","display_name":"UK Health Security Agency","ror":"https://ror.org/018h10037","country_code":"GB","type":"government","lineage":["https://openalex.org/I1311074006","https://openalex.org/I4387153084"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paolo Ribeca","raw_affiliation_strings":["Biomathematics and Statistics Scotland, The James Hutton Institute , Edinburgh EH9 3FD, UK","Gastrointestinal Bacteria Reference Unit, UK Health Security Agency , London NW9 5EQ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomathematics and Statistics Scotland, The James Hutton Institute , Edinburgh EH9 3FD, UK","institution_ids":["https://openalex.org/I15477984","https://openalex.org/I4210125655"]},{"raw_affiliation_string":"Gastrointestinal Bacteria Reference Unit, UK Health Security Agency , London NW9 5EQ, UK","institution_ids":["https://openalex.org/I4387153084"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5042745262"],"corresponding_institution_ids":["https://openalex.org/I39555362"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.772,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.72032828,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.43619999289512634,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.43619999289512634,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.1388999968767166,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":0.06599999964237213,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.5673373937606812},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5118278861045837},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4435841739177704},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40564990043640137},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3779378831386566},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.37081995606422424},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35341688990592957},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1774328052997589},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10174620151519775}],"concepts":[{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.5673373937606812},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5118278861045837},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4435841739177704},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40564990043640137},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3779378831386566},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.37081995606422424},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35341688990592957},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1774328052997589},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10174620151519775},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac761","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac761","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac761/48448702/btac761.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36440957","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36440957","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:wrap.warwick.ac.uk:171535","is_oa":true,"landing_page_url":"https://wrap.warwick.ac.uk/171535/1/WRAP-Distinguishing-imported-locally-geographically-genomic-infectious-disease-22.pdf","pdf_url":"https://wrap.warwick.ac.uk/171535/1/WRAP-Distinguishing-imported-locally-geographically-genomic-infectious-disease-22.pdf","source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9805578","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9805578","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac761","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac761","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac761/48448702/btac761.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2026327645","display_name":"EPSRC Centre for Doctoral Training in Mathematics for Real-World Systems II","funder_award_id":"EP/S022244/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3159882520","display_name":null,"funder_award_id":"EP/S022244/1","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G3618372858","display_name":"UK Crop Diversity Bioinformatics Resource","funder_award_id":"BB/S019669/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3957548433","display_name":null,"funder_award_id":"BB/S019669/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8123605194","display_name":null,"funder_award_id":"NIHR-INF-1687","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G8214790366","display_name":null,"funder_award_id":"BioSS-2-SAT","funder_id":"https://openalex.org/F4320312695","funder_display_name":"Rural and Environment Science and Analytical Services Division"},{"id":"https://openalex.org/G8276865495","display_name":null,"funder_award_id":"NIHR-INF-1688","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"}],"funders":[{"id":"https://openalex.org/F4320309229","display_name":"National Institute on Handicapped Research","ror":null},{"id":"https://openalex.org/F4320312695","display_name":"Rural and Environment Science and Analytical Services Division","ror":null},{"id":"https://openalex.org/F4320313466","display_name":"James Hutton Institute","ror":"https://ror.org/03rzp5127"},{"id":"https://openalex.org/F4320318095","display_name":"National Institute for Health Research Health Protection Research Unit","ror":null},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4310154254.pdf","grobid_xml":"https://content.openalex.org/works/W4310154254.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W1546828436","https://openalex.org/W1567012231","https://openalex.org/W1665378886","https://openalex.org/W1708072900","https://openalex.org/W1791636287","https://openalex.org/W1915699870","https://openalex.org/W1974064502","https://openalex.org/W1984486655","https://openalex.org/W1993210385","https://openalex.org/W2012689725","https://openalex.org/W2025021478","https://openalex.org/W2031611770","https://openalex.org/W2057765075","https://openalex.org/W2080723129","https://openalex.org/W2081410257","https://openalex.org/W2088267428","https://openalex.org/W2093464515","https://openalex.org/W2098959738","https://openalex.org/W2105090664","https://openalex.org/W2110065044","https://openalex.org/W2110129027","https://openalex.org/W2115596355","https://openalex.org/W2116623092","https://openalex.org/W2117761900","https://openalex.org/W2139871526","https://openalex.org/W2144631630","https://openalex.org/W2146217823","https://openalex.org/W2156913396","https://openalex.org/W2157991545","https://openalex.org/W2163332307","https://openalex.org/W2167740275","https://openalex.org/W2168934042","https://openalex.org/W2294528210","https://openalex.org/W2409218178","https://openalex.org/W2469934267","https://openalex.org/W2512279394","https://openalex.org/W2516104505","https://openalex.org/W2532203913","https://openalex.org/W2577533595","https://openalex.org/W2577537660","https://openalex.org/W2615098984","https://openalex.org/W2752084418","https://openalex.org/W2807308836","https://openalex.org/W2901954177","https://openalex.org/W2949601812","https://openalex.org/W2950040478","https://openalex.org/W2950234705","https://openalex.org/W2951421477","https://openalex.org/W2951878836","https://openalex.org/W2954212866","https://openalex.org/W3045522828","https://openalex.org/W3103364054","https://openalex.org/W3126107688","https://openalex.org/W3134208712","https://openalex.org/W3175122578","https://openalex.org/W3210936292","https://openalex.org/W4210633230","https://openalex.org/W4211049957","https://openalex.org/W4220807057","https://openalex.org/W4225522864","https://openalex.org/W4281697987","https://openalex.org/W4292575169","https://openalex.org/W6632567943","https://openalex.org/W6634150524","https://openalex.org/W6675677446","https://openalex.org/W6684547848","https://openalex.org/W6731902304","https://openalex.org/W6797726345"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1185300216","https://openalex.org/W2954163146","https://openalex.org/W2899086345","https://openalex.org/W2896057011","https://openalex.org/W4238675884","https://openalex.org/W2589817099","https://openalex.org/W3033465211","https://openalex.org/W4377093630","https://openalex.org/W1971600963"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,222],"ability":[2],"to":[3,44,99,148,179,210],"distinguish":[4],"imported":[5,101],"cases":[6,10,91],"from":[7,39,60,79,92,184,229],"locally":[8,113],"acquired":[9,114],"has":[11,133,166],"important":[12,203],"consequences":[13],"for":[14,27,29,139],"the":[15,93,122,125,140,152,163,167,171,206],"selection":[16],"of":[17,58,82,112,124,142,198,208,215],"public":[18],"health":[19],"control":[20],"strategies.":[21],"Genomic":[22],"data":[23,38,78,149,234],"can":[24],"be":[25],"useful":[26],"this,":[28],"example,":[30],"using":[31],"a":[32,80,106,196,211,216],"phylogeographic":[33],"analysis":[34],"in":[35,121,195],"which":[36,63],"genomic":[37,77,182],"multiple":[40],"locations":[41],"are":[42,97,128,235],"compared":[43],"determine":[45],"likely":[46],"migration":[47],"events":[48],"between":[49],"locations.":[50],"However,":[51],"these":[52],"methods":[53],"typically":[54],"require":[55],"good":[56,134,159],"samples":[57],"genomes":[59],"all":[61],"locations,":[62],"is":[64,226],"rarely":[65],"available.":[66],"RESULTS:":[67],"Here,":[68],"we":[69,96,175],"propose":[70],"an":[71],"alternative":[72],"approach":[73],"that":[74,111,192],"only":[75],"uses":[76],"location":[81],"interest.":[83],"By":[84],"comparing":[85],"each":[86],"new":[87],"case":[88],"with":[89],"previous":[90],"same":[94,168],"location,":[95],"able":[98],"detect":[100],"cases,":[102],"as":[103,170],"they":[104],"have":[105],"different":[107],"genealogical":[108],"distribution":[109],"than":[110],"cases.":[115],"We":[116,144],"show":[117,191],"that,":[118],"when":[119,162],"variations":[120],"size":[123,169],"local":[126,164],"population":[127,165],"accounted":[129],"for,":[130],"our":[131,146,177],"method":[132,147,178],"sensitivity":[135],"and":[136,156,187,190],"excellent":[137],"specificity":[138],"detection":[141],"imports.":[143],"applied":[145,176],"simulated":[150],"under":[151],"structured":[153],"coalescent":[154],"model":[155],"demonstrate":[157],"relatively":[158],"performance":[160],"even":[161],"external":[172],"population.":[173,218],"Finally,":[174],"several":[180],"recent":[181],"datasets":[183],"both":[185],"bacterial":[186],"viral":[188],"pathogens,":[189],"it":[193],"can,":[194],"matter":[197],"seconds":[199],"or":[200],"minutes,":[201],"deliver":[202],"insights":[204],"on":[205],"number":[207],"imports":[209],"geographically":[212],"limited":[213],"sample":[214],"pathogen":[217],"AVAILABILITY":[219],"AND":[220],"IMPLEMENTATION:":[221],"R":[223],"package":[224],"DetectImports":[225],"freely":[227],"available":[228,236],"https://github.com/xavierdidelot/DetectImports.":[230],"SUPPLEMENTARY":[231],"INFORMATION:":[232],"Supplementary":[233],"at":[237],"Bioinformatics":[238],"online.":[239]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
