{"id":"https://openalex.org/W4309245183","doi":"https://doi.org/10.1093/bioinformatics/btac742","title":"SEGCOND predicts putative transcriptional condensate-associated genomic regions by integrating multi-omics data","display_name":"SEGCOND predicts putative transcriptional condensate-associated genomic regions by integrating multi-omics data","publication_year":2022,"publication_date":"2022-11-16","ids":{"openalex":"https://openalex.org/W4309245183","doi":"https://doi.org/10.1093/bioinformatics/btac742","pmid":"https://pubmed.ncbi.nlm.nih.gov/36394233"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac742","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac742","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac742/48448950/btac742.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac742/48448950/btac742.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085935631","display_name":"Antonios Klonizakis","orcid":"https://orcid.org/0000-0001-9850-6971"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Antonios Klonizakis","raw_affiliation_strings":["Department of Medicine and Life Sciences, Universitat Pompeu Fabra (UPF), Doctor Aiguader 88 , Barcelona 08003, Spain","Genome Biology Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), C/ del Dr. Aiguader 88 , Barcelona 08003, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Medicine and Life Sciences, Universitat Pompeu Fabra (UPF), Doctor Aiguader 88 , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Genome Biology Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), C/ del Dr. Aiguader 88 , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024197769","display_name":"Christoforos Nikolaou","orcid":null},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Christoforos Nikolaou","raw_affiliation_strings":["Institute for Bioinnovation, Biomedical Sciences Research Centre \u2018Alexander Fleming\u2019, Fleming 34 , Vari 16672, Greece"],"affiliations":[{"raw_affiliation_string":"Institute for Bioinnovation, Biomedical Sciences Research Centre \u2018Alexander Fleming\u2019, Fleming 34 , Vari 16672, Greece","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039868300","display_name":"Thomas Graf","orcid":null},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Thomas Graf","raw_affiliation_strings":["Department of Medicine and Life Sciences, Universitat Pompeu Fabra (UPF), Doctor Aiguader 88 , Barcelona 08003, Spain","Genome Biology Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), C/ del Dr. Aiguader 88 , Barcelona 08003, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Medicine and Life Sciences, Universitat Pompeu Fabra (UPF), Doctor Aiguader 88 , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Genome Biology Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), C/ del Dr. Aiguader 88 , Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5085935631"],"corresponding_institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210137962"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.2604,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.53049888,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.8668422102928162},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6731283068656921},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.6458045244216919},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5835952758789062},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5135619640350342},{"id":"https://openalex.org/keywords/genomic-organization","display_name":"Genomic organization","score":0.45958060026168823},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45488715171813965},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3124898672103882},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2658350467681885}],"concepts":[{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.8668422102928162},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6731283068656921},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.6458045244216919},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5835952758789062},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5135619640350342},{"id":"https://openalex.org/C22322919","wikidata":"https://www.wikidata.org/wiki/Q5533501","display_name":"Genomic organization","level":4,"score":0.45958060026168823},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45488715171813965},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3124898672103882},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2658350467681885}],"mesh":[{"descriptor_ui":"D000088202","descriptor_name":"Nuclear Bodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000088202","descriptor_name":"Nuclear Bodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000088202","descriptor_name":"Nuclear Bodies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac742","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac742","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac742/48448950/btac742.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36394233","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36394233","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repositori.upf.edu:10230/56115","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/56115","pdf_url":"http://repositori.upf.edu/bitstream/10230/56115/1/Klonizakis_b_segc.pdf","source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9805567","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9805567","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac742","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac742","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac742/48448950/btac742.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7366551821","display_name":null,"funder_award_id":"PID2019-109354GB-I00","funder_id":"https://openalex.org/F4320326262","funder_display_name":"Ministerio de Asuntos Econ\u00f3micos y Transformaci\u00f3n Digital, Gobierno de Espa\u00f1a"}],"funders":[{"id":"https://openalex.org/F4320326262","display_name":"Ministerio de Asuntos Econ\u00f3micos y Transformaci\u00f3n Digital, Gobierno de Espa\u00f1a","ror":"https://ror.org/03sv46s19"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4309245183.pdf","grobid_xml":"https://content.openalex.org/works/W4309245183.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1529048149","https://openalex.org/W1681390718","https://openalex.org/W1971578941","https://openalex.org/W2018363492","https://openalex.org/W2060484997","https://openalex.org/W2079407198","https://openalex.org/W2114154892","https://openalex.org/W2128151873","https://openalex.org/W2166368890","https://openalex.org/W2341539131","https://openalex.org/W2557493613","https://openalex.org/W2603000633","https://openalex.org/W2762133927","https://openalex.org/W2809057270","https://openalex.org/W2901209536","https://openalex.org/W2945038365","https://openalex.org/W2945220048","https://openalex.org/W2968775930","https://openalex.org/W2970073459","https://openalex.org/W3033434116","https://openalex.org/W3042896257","https://openalex.org/W3091424335","https://openalex.org/W3116814341","https://openalex.org/W3136167697","https://openalex.org/W3197597917","https://openalex.org/W4229375645","https://openalex.org/W4242856680"],"related_works":["https://openalex.org/W2586783543","https://openalex.org/W2884361791","https://openalex.org/W2594022603","https://openalex.org/W2900562943","https://openalex.org/W2594764564","https://openalex.org/W2887293316","https://openalex.org/W4360611266","https://openalex.org/W2913199583","https://openalex.org/W2411851904","https://openalex.org/W2986519452"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
