{"id":"https://openalex.org/W4308373390","doi":"https://doi.org/10.1093/bioinformatics/btac717","title":"An approach of gene regulatory network construction using mixed entropy optimizing context-related likelihood mutual information","display_name":"An approach of gene regulatory network construction using mixed entropy optimizing context-related likelihood mutual information","publication_year":2022,"publication_date":"2022-11-07","ids":{"openalex":"https://openalex.org/W4308373390","doi":"https://doi.org/10.1093/bioinformatics/btac717","pmid":"https://pubmed.ncbi.nlm.nih.gov/36342190"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac717","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac717","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac717/48449008/btac717.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac717/48449008/btac717.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015721394","display_name":"Jimeng Lei","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jimeng Lei","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043672427","display_name":"Zongheng Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zongheng Cai","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100432162","display_name":"Xinyi He","orcid":"https://orcid.org/0000-0003-4990-1777"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinyi He","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101719594","display_name":"Wanting Zheng","orcid":"https://orcid.org/0000-0002-0353-8784"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanting Zheng","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016726574","display_name":"Jianxiao Liu","orcid":"https://orcid.org/0000-0002-9165-4012"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianxiao Liu","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University , Wuhan 430070, China","Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-9165-4012","affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5016726574"],"corresponding_institution_ids":["https://openalex.org/I204823248"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.0185,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.74449769,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.730400025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.730400025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.13300000131130219,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.07590000331401825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.7570708990097046},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6956096887588501},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6483104228973389},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.5986701250076294},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5275813341140747},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.5137568712234497},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4543818533420563},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.32803797721862793},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22263050079345703},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20889288187026978},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.17507866024971008},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17042532563209534},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.165242999792099}],"concepts":[{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.7570708990097046},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6956096887588501},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6483104228973389},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.5986701250076294},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5275813341140747},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.5137568712234497},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4543818533420563},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.32803797721862793},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22263050079345703},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20889288187026978},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.17507866024971008},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17042532563209534},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.165242999792099},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac717","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac717","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac717/48449008/btac717.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36342190","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36342190","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9805593","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9805593","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac717","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac717","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac717/48449008/btac717.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G3902040863","display_name":null,"funder_award_id":"2021ZKPY018","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4071971942","display_name":null,"funder_award_id":"91935302","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5621809375","display_name":null,"funder_award_id":"2662022YLYJ010","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6023783866","display_name":null,"funder_award_id":"2662021JC008","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6125655272","display_name":null,"funder_award_id":"2021YFD1200504","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8492919643","display_name":null,"funder_award_id":"31601078","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1635484243","https://openalex.org/W1996264210","https://openalex.org/W1997207317","https://openalex.org/W2003003919","https://openalex.org/W2006681603","https://openalex.org/W2018891628","https://openalex.org/W2037544231","https://openalex.org/W2044525257","https://openalex.org/W2057306408","https://openalex.org/W2060356473","https://openalex.org/W2076513103","https://openalex.org/W2078149659","https://openalex.org/W2083507918","https://openalex.org/W2100271852","https://openalex.org/W2106945333","https://openalex.org/W2109384743","https://openalex.org/W2111384508","https://openalex.org/W2117994680","https://openalex.org/W2121695897","https://openalex.org/W2122708083","https://openalex.org/W2139997707","https://openalex.org/W2146152876","https://openalex.org/W2157581457","https://openalex.org/W2159547203","https://openalex.org/W2163296115","https://openalex.org/W2165700458","https://openalex.org/W2326655560","https://openalex.org/W2341360633","https://openalex.org/W2342019990","https://openalex.org/W2465098683","https://openalex.org/W2498761000","https://openalex.org/W2757234574","https://openalex.org/W2791183315","https://openalex.org/W2887216660","https://openalex.org/W2899545492","https://openalex.org/W2901292166","https://openalex.org/W2974274234","https://openalex.org/W2997831639","https://openalex.org/W3095716988","https://openalex.org/W3098590676","https://openalex.org/W3099289621","https://openalex.org/W3142178348","https://openalex.org/W6670026339"],"related_works":["https://openalex.org/W2036846997","https://openalex.org/W2112223184","https://openalex.org/W2347586617","https://openalex.org/W2115702840","https://openalex.org/W2161963661","https://openalex.org/W2165061339","https://openalex.org/W2125614474","https://openalex.org/W4379381651","https://openalex.org/W2295845123","https://openalex.org/W2358054814"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,159,180],"question":[2],"of":[3,15,36,51,58,156,168,174,194],"how":[4],"to":[5,23,90,107,164],"construct":[6],"gene":[7,37,60,71,117,136,151,195],"regulatory":[8,38,46,61,72,111,118,137,177],"networks":[9,73],"has":[10,29],"long":[11],"been":[12,30],"a":[13,67,103],"focus":[14],"biological":[16],"research.":[17],"Mutual":[18],"information":[19,82,94,148,170],"can":[20],"be":[21],"used":[22,32],"measure":[24,44],"nonlinear":[25],"relationships,":[26],"and":[27,113,127,205,221,225,234,240],"it":[28],"widely":[31],"in":[33,131],"the":[34,49,56,92,115,122,132,134,144,154,166,172,175,185],"construction":[35,197],"networks.":[39,62],"However,":[40],"this":[41],"method":[42,68,187],"cannot":[43],"indirect":[45,110],"relationships":[47,112],"under":[48,153],"influence":[50,155],"multiple":[52,157],"genes,":[53],"which":[54],"reduces":[55],"accuracy":[57],"inferring":[59],"APPROACH:":[63],"This":[64],"work":[65],"proposes":[66],"for":[69],"constructing":[70],"based":[74],"on":[75,171,199],"mixed":[76],"entropy":[77,86],"optimizing":[78],"context-related":[79,104],"likelihood":[80,105],"mutual":[81,93,146,169],"(MEOMI).":[83],"First,":[84],"two":[85,226],"estimators":[87],"were":[88],"combined":[89],"calculate":[91],"between":[95,125,150],"genes.":[96,158],"Then,":[97],"distribution":[98],"optimization":[99],"was":[100,139,161],"performed":[101,188],"using":[102],"algorithm":[106],"eliminate":[108,128],"some":[109],"obtain":[114,121],"initial":[116,135],"network.":[119],"To":[120],"complex":[123],"interaction":[124],"genes":[126],"redundant":[129],"edges":[130],"network,":[133,215],"network":[138,160,196,220],"further":[140],"optimized":[141],"by":[142],"calculating":[143],"conditional":[145],"inclusive":[147],"(CMI2)":[149],"pairs":[152],"iteratively":[162],"updated":[163],"reduce":[165],"impact":[167],"overestimation":[173],"direct":[176],"intensity.":[178],"RESULTS:":[179],"experimental":[181],"results":[182],"show":[183],"that":[184],"MEOMI":[186],"better":[189],"than":[190],"several":[191],"other":[192],"kinds":[193],"methods":[198],"DREAM":[200],"challenge":[201],"simulated":[202],"datasets":[203,211],"(DREAM3":[204],"DREAM5),":[206],"three":[207],"real":[208],"Escherichia":[209],"coli":[210],"(E.coli":[212],"SOS":[213,217],"pathway":[214],"E.coli":[216,222],"DNA":[218],"repair":[219],"community":[223],"network)":[224],"human":[227],"datasets.":[228],"AVAILABILITY":[229],"AND":[230],"IMPLEMENTATION:":[231],"Source":[232],"code":[233],"dataset":[235],"are":[236,246],"available":[237,247],"at":[238,248],"https://github.com/Dalei-Dalei/MEOMI/":[239],"http://122.205.95.139/MEOMI/.":[241],"SUPPLEMENTARY":[242],"INFORMATION:":[243],"Supplementary":[244],"data":[245],"Bioinformatics":[249],"online.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}
