{"id":"https://openalex.org/W4308370073","doi":"https://doi.org/10.1093/bioinformatics/btac715","title":"sAMPpred-GAT: prediction of antimicrobial peptide by graph attention network and predicted peptide structure","display_name":"sAMPpred-GAT: prediction of antimicrobial peptide by graph attention network and predicted peptide structure","publication_year":2022,"publication_date":"2022-11-07","ids":{"openalex":"https://openalex.org/W4308370073","doi":"https://doi.org/10.1093/bioinformatics/btac715","pmid":"https://pubmed.ncbi.nlm.nih.gov/36342186"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac715","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac715","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac715/48448854/btac715.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac715/48448854/btac715.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101667939","display_name":"Ke Yan","orcid":"https://orcid.org/0000-0002-5326-4267"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ke Yan","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070009201","display_name":"Hongwu Lv","orcid":"https://orcid.org/0000-0002-0607-759X"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongwu Lv","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101989488","display_name":"Yichen Guo","orcid":"https://orcid.org/0000-0002-9987-8942"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yichen Guo","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101440710","display_name":"Wei Peng","orcid":"https://orcid.org/0000-0002-0868-0974"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Peng","raw_affiliation_strings":["School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100395591","display_name":"Bin Liu","orcid":"https://orcid.org/0000-0003-3685-9469"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bin Liu","raw_affiliation_strings":["Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology , Beijing 100081, China","School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China"],"raw_orcid":"https://orcid.org/0000-0003-3685-9469","affiliations":[{"raw_affiliation_string":"Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology , Beijing 100081, China","institution_ids":["https://openalex.org/I125839683"]},{"raw_affiliation_string":"School of Computer Science and Technology, Beijing Institute of Technology , Beijing 100081, China","institution_ids":["https://openalex.org/I125839683"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100395591"],"corresponding_institution_ids":["https://openalex.org/I125839683"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":25.3096,"has_fulltext":true,"cited_by_count":227,"citation_normalized_percentile":{"value":0.99888218,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"39","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.8838000297546387,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.8838000297546387,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.061000000685453415,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.03689999878406525,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6882656812667847},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.6494906544685364},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6148916482925415},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.5243204832077026},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.48887699842453003},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.48665958642959595},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.45406362414360046},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4443577826023102},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4402974545955658},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.43158745765686035},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4274807572364807},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4183536767959595},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4083963632583618},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3461177349090576},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2723686099052429},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2293758988380432},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22064423561096191},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1461317241191864}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6882656812667847},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.6494906544685364},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6148916482925415},{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.5243204832077026},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.48887699842453003},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.48665958642959595},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.45406362414360046},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4443577826023102},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4402974545955658},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.43158745765686035},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4274807572364807},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4183536767959595},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4083963632583618},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3461177349090576},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2723686099052429},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2293758988380432},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22064423561096191},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1461317241191864},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011108","descriptor_name":"Polymers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac715","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac715","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac715/48448854/btac715.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36342186","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36342186","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9805557","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9805557","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac715","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac715","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/1/btac715/48448854/btac715.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.699999988079071,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G3267686570","display_name":null,"funder_award_id":"62102030","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6351260564","display_name":null,"funder_award_id":"62271049","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6876496325","display_name":null,"funder_award_id":"JQ19019","funder_id":"https://openalex.org/F4320322919","funder_display_name":"Natural Science Foundation of Beijing Municipality"},{"id":"https://openalex.org/G7894669521","display_name":null,"funder_award_id":"U22A2039","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322919","display_name":"Natural Science Foundation of Beijing Municipality","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4308370073.pdf","grobid_xml":"https://content.openalex.org/works/W4308370073.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W1931581539","https://openalex.org/W2015490529","https://openalex.org/W2051210555","https://openalex.org/W2054602599","https://openalex.org/W2062296203","https://openalex.org/W2067402644","https://openalex.org/W2075738910","https://openalex.org/W2095705004","https://openalex.org/W2097606916","https://openalex.org/W2097834518","https://openalex.org/W2115622227","https://openalex.org/W2129115651","https://openalex.org/W2152380569","https://openalex.org/W2153099927","https://openalex.org/W2158714788","https://openalex.org/W2159861471","https://openalex.org/W2163316049","https://openalex.org/W2173732482","https://openalex.org/W2175270296","https://openalex.org/W2339719866","https://openalex.org/W2607284033","https://openalex.org/W2739999456","https://openalex.org/W2791848964","https://openalex.org/W2800333284","https://openalex.org/W2806146459","https://openalex.org/W2807001312","https://openalex.org/W2899153547","https://openalex.org/W2899279931","https://openalex.org/W2914272550","https://openalex.org/W2965128681","https://openalex.org/W2967175367","https://openalex.org/W2968079609","https://openalex.org/W2970900727","https://openalex.org/W2984592028","https://openalex.org/W2997234557","https://openalex.org/W2998496395","https://openalex.org/W3021338900","https://openalex.org/W3025501158","https://openalex.org/W3036144909","https://openalex.org/W3043115370","https://openalex.org/W3080137602","https://openalex.org/W3094708881","https://openalex.org/W3096599651","https://openalex.org/W3097405028","https://openalex.org/W3116112801","https://openalex.org/W3122585911","https://openalex.org/W3126876258","https://openalex.org/W3139686515","https://openalex.org/W3145990216","https://openalex.org/W3159193120","https://openalex.org/W3164046276","https://openalex.org/W3177828909","https://openalex.org/W3188372451","https://openalex.org/W3196936178","https://openalex.org/W3216979156","https://openalex.org/W4200185639","https://openalex.org/W4210968711","https://openalex.org/W4220952154","https://openalex.org/W4225665657","https://openalex.org/W4226148785","https://openalex.org/W4250042253","https://openalex.org/W4385245566","https://openalex.org/W6663637799","https://openalex.org/W6667333778","https://openalex.org/W6674330103","https://openalex.org/W6739901393","https://openalex.org/W6767957595","https://openalex.org/W6779342232"],"related_works":["https://openalex.org/W2965546495","https://openalex.org/W4389116644","https://openalex.org/W2153315159","https://openalex.org/W3103844505","https://openalex.org/W259157601","https://openalex.org/W4205463238","https://openalex.org/W2153414768","https://openalex.org/W2464070928","https://openalex.org/W2060259273","https://openalex.org/W2137259082"],"abstract_inverted_index":{"MOTIVATION:":[0],"Antimicrobial":[1],"peptides":[2,9,156],"(AMPs)":[3],"are":[4,43,146,157,231],"essential":[5],"components":[6],"of":[7,31,64,91,173,184,212],"therapeutic":[8],"for":[10,45,85,105,203],"innate":[11],"immunity.":[12],"Researchers":[13],"have":[14],"developed":[15],"several":[16],"computational":[17,81],"methods":[18,170],"to":[19,61,69,136,152],"predict":[20,153],"the":[21,29,35,52,62,71,89,96,101,112,116,134,138,142,149,155,167,185,189,196,220],"potential":[22],"AMPs":[23],"from":[24],"many":[25],"candidate":[26],"peptides.":[27],"With":[28],"development":[30],"artificial":[32],"intelligent":[33],"techniques,":[34],"protein":[36,46],"structures":[37,104],"can":[38,214],"be":[39,215],"accurately":[40],"predicted,":[41],"which":[42],"useful":[44],"sequence":[47,120],"and":[48,122,175,219],"function":[49],"analysis.":[50],"Unfortunately,":[51],"predicted":[53,102,117,197],"peptide":[54,103,118,198],"structure":[55,199],"information":[56,121,200],"has":[57],"not":[58],"been":[59],"applied":[60],"field":[63],"AMP":[65,86,106,158,204],"prediction":[66],"so":[67],"as":[68,148],"improve":[70],"predictive":[72],"performance.":[73],"RESULTS:":[74],"In":[75],"this":[76],"study,":[77],"we":[78],"proposed":[79],"a":[80],"predictor":[82,110],"called":[83],"sAMPpred-GAT":[84,94,109,165,213],"identification.":[87],"To":[88],"best":[90],"our":[92],"knowledge,":[93],"is":[95,130,201,223],"first":[97],"approach":[98],"based":[99,114],"on":[100,115,133,188],"prediction.":[107,205],"The":[108,125],"constructs":[111],"graphs":[113,135],"structures,":[119],"evolutionary":[123],"information.":[124],"Graph":[126],"Attention":[127],"Network":[128],"(GAT)":[129],"then":[131],"performed":[132],"learn":[137],"discriminative":[139],"features.":[140],"Finally,":[141],"full":[143],"connection":[144],"networks":[145],"utilized":[147],"output":[150],"module":[151],"whether":[154],"or":[159,178],"not.":[160],"Experimental":[161],"results":[162],"show":[163],"that":[164,195],"outperforms":[166],"other":[168,186],"state-of-the-art":[169],"in":[171,182],"terms":[172,183],"AUC,":[174],"achieves":[176],"better":[177],"highly":[179],"comparable":[180],"performance":[181],"metrics":[187],"eight":[190],"independent":[191],"test":[192],"datasets,":[193],"demonstrating":[194],"important":[202],"AVAILABILITY":[206],"AND":[207],"IMPLEMENTATION:":[208],"A":[209],"user-friendly":[210],"webserver":[211],"accessed":[216],"at":[217,225,233],"http://bliulab.net/sAMPpred-GAT":[218],"source":[221],"code":[222],"available":[224,232],"https://github.com/HongWuL/sAMPpred-GAT/.":[226],"SUPPLEMENTARY":[227],"INFORMATION:":[228],"Supplementary":[229],"data":[230],"Bioinformatics":[234],"online.":[235]},"counts_by_year":[{"year":2026,"cited_by_count":34},{"year":2025,"cited_by_count":68},{"year":2024,"cited_by_count":94},{"year":2023,"cited_by_count":30},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
