{"id":"https://openalex.org/W4307502375","doi":"https://doi.org/10.1093/bioinformatics/btac712","title":"Neuron tracing from light microscopy images: automation, deep learning and bench testing","display_name":"Neuron tracing from light microscopy images: automation, deep learning and bench testing","publication_year":2022,"publication_date":"2022-10-27","ids":{"openalex":"https://openalex.org/W4307502375","doi":"https://doi.org/10.1093/bioinformatics/btac712","pmid":"https://pubmed.ncbi.nlm.nih.gov/36303315"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac712","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac712","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/24/5329/47887011/btac712.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/24/5329/47887011/btac712.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100376625","display_name":"Yufeng Liu","orcid":"https://orcid.org/0000-0003-0848-5113"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yufeng Liu","raw_affiliation_strings":["School of Biological Science and Medical Engineering, Southeast University , Nanjing, China"],"affiliations":[{"raw_affiliation_string":"School of Biological Science and Medical Engineering, Southeast University , Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053399953","display_name":"Gaoyu Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gaoyu Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Southeast University , Nanjing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Southeast University , Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087672831","display_name":"Giorgio A. Ascoli","orcid":"https://orcid.org/0000-0002-0964-676X"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]},{"id":"https://openalex.org/I40036882","display_name":"Institute for Advanced Study","ror":"https://ror.org/00f809463","country_code":"US","type":"facility","lineage":["https://openalex.org/I40036882"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giorgio A Ascoli","raw_affiliation_strings":["Center for Neural Informatics, Structures, & Plasticity, Krasnow Institute for Advanced Study, George Mason University , Fairfax, VA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Neural Informatics, Structures, & Plasticity, Krasnow Institute for Advanced Study, George Mason University , Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631","https://openalex.org/I40036882"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017448934","display_name":"Jiang\u2010Ning Zhou","orcid":"https://orcid.org/0000-0003-1225-2873"},"institutions":[{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]},{"id":"https://openalex.org/I4210136596","display_name":"First Affiliated Hospital of Anhui Medical University","ror":"https://ror.org/03t1yn780","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210136596"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiangning Zhou","raw_affiliation_strings":["Institute of Brain Science, The First Affiliated Hospital of Anhui Medical University , Hefei, China"],"affiliations":[{"raw_affiliation_string":"Institute of Brain Science, The First Affiliated Hospital of Anhui Medical University , Hefei, China","institution_ids":["https://openalex.org/I4210136596","https://openalex.org/I197869895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100343786","display_name":"Lijuan Liu","orcid":"https://orcid.org/0000-0002-9548-6183"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lijuan Liu","raw_affiliation_strings":["School of Biological Science and Medical Engineering, Southeast University , Nanjing, China"],"affiliations":[{"raw_affiliation_string":"School of Biological Science and Medical Engineering, Southeast University , Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100343786"],"corresponding_institution_ids":["https://openalex.org/I76569877"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":12.4432,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.98644798,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"38","issue":"24","first_page":"5329","last_page":"5339"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.886025071144104},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7226327061653137},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.5638083815574646},{"id":"https://openalex.org/keywords/neuron","display_name":"Neuron","score":0.526692271232605},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4950496256351471},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47878730297088623},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3245938718318939},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.317380428314209},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1263226866722107},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06454351544380188}],"concepts":[{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.886025071144104},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7226327061653137},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.5638083815574646},{"id":"https://openalex.org/C2778794669","wikidata":"https://www.wikidata.org/wiki/Q43054","display_name":"Neuron","level":2,"score":0.526692271232605},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4950496256351471},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47878730297088623},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3245938718318939},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.317380428314209},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1263226866722107},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06454351544380188},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac712","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac712","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/24/5329/47887011/btac712.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36303315","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36303315","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9750132","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9750132","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac712","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac712","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/24/5329/47887011/btac712.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3276719218","display_name":null,"funder_award_id":"R01NS86082","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3643889556","display_name":null,"funder_award_id":"R01NS36000","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6231792503","display_name":null,"funder_award_id":"RF1MH128693","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320324856","display_name":"Southeast University","ror":"https://ror.org/04ct4d772"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4307502375.pdf","grobid_xml":"https://content.openalex.org/works/W4307502375.grobid-xml"},"referenced_works_count":120,"referenced_works":["https://openalex.org/W1238092070","https://openalex.org/W1427337929","https://openalex.org/W1482214570","https://openalex.org/W1500601525","https://openalex.org/W1508135620","https://openalex.org/W1559344731","https://openalex.org/W1885626623","https://openalex.org/W1901129140","https://openalex.org/W1968627050","https://openalex.org/W1973195069","https://openalex.org/W1985233543","https://openalex.org/W1987300577","https://openalex.org/W1988535312","https://openalex.org/W1989396876","https://openalex.org/W1998874218","https://openalex.org/W2007337197","https://openalex.org/W2008022195","https://openalex.org/W2009275634","https://openalex.org/W2011650974","https://openalex.org/W2014202210","https://openalex.org/W2014252132","https://openalex.org/W2014281241","https://openalex.org/W2017478274","https://openalex.org/W2018227909","https://openalex.org/W2018709063","https://openalex.org/W2022937801","https://openalex.org/W2033813088","https://openalex.org/W2036901575","https://openalex.org/W2047951563","https://openalex.org/W2048316306","https://openalex.org/W2057001609","https://openalex.org/W2061186544","https://openalex.org/W2061628168","https://openalex.org/W2074633779","https://openalex.org/W2083245381","https://openalex.org/W2084972763","https://openalex.org/W2092098765","https://openalex.org/W2092859932","https://openalex.org/W2096320880","https://openalex.org/W2097062636","https://openalex.org/W2100961570","https://openalex.org/W2104095591","https://openalex.org/W2109255472","https://openalex.org/W2114240017","https://openalex.org/W2124257654","https://openalex.org/W2132054471","https://openalex.org/W2134756983","https://openalex.org/W2142958591","https://openalex.org/W2143008975","https://openalex.org/W2152235301","https://openalex.org/W2153965609","https://openalex.org/W2156012604","https://openalex.org/W2156114286","https://openalex.org/W2157408013","https://openalex.org/W2157700389","https://openalex.org/W2169331639","https://openalex.org/W2202170526","https://openalex.org/W2256981962","https://openalex.org/W2281148031","https://openalex.org/W2345173121","https://openalex.org/W2404192493","https://openalex.org/W2483701722","https://openalex.org/W2494922686","https://openalex.org/W2534171296","https://openalex.org/W2560171554","https://openalex.org/W2571219130","https://openalex.org/W2584131486","https://openalex.org/W2587001086","https://openalex.org/W2594660495","https://openalex.org/W2600862990","https://openalex.org/W2622865236","https://openalex.org/W2761733590","https://openalex.org/W2766078734","https://openalex.org/W2767579567","https://openalex.org/W2794163195","https://openalex.org/W2805085936","https://openalex.org/W2883092763","https://openalex.org/W2884739365","https://openalex.org/W2890024329","https://openalex.org/W2903771707","https://openalex.org/W2950062384","https://openalex.org/W2951377931","https://openalex.org/W2952846208","https://openalex.org/W2957395818","https://openalex.org/W2966593583","https://openalex.org/W2968844558","https://openalex.org/W2971899185","https://openalex.org/W2979910668","https://openalex.org/W2980313972","https://openalex.org/W2982679883","https://openalex.org/W3010806563","https://openalex.org/W3021105102","https://openalex.org/W3035714866","https://openalex.org/W3042933035","https://openalex.org/W3079866518","https://openalex.org/W3083599814","https://openalex.org/W3091511195","https://openalex.org/W3092991072","https://openalex.org/W3097433429","https://openalex.org/W3156926590","https://openalex.org/W3194924061","https://openalex.org/W3199684914","https://openalex.org/W3202358235","https://openalex.org/W3202751057","https://openalex.org/W3206008729","https://openalex.org/W3212737625","https://openalex.org/W3215736668","https://openalex.org/W4221083769","https://openalex.org/W4225261422","https://openalex.org/W4225424918","https://openalex.org/W4225744791","https://openalex.org/W4229044377","https://openalex.org/W4280511273","https://openalex.org/W4285018307","https://openalex.org/W4285412332","https://openalex.org/W4285797854","https://openalex.org/W4383619805","https://openalex.org/W6766740334","https://openalex.org/W6794346546","https://openalex.org/W6839974313"],"related_works":["https://openalex.org/W2888673113","https://openalex.org/W2056065966","https://openalex.org/W2352602608","https://openalex.org/W2062641654","https://openalex.org/W2212288070","https://openalex.org/W3149975758","https://openalex.org/W4375867731","https://openalex.org/W1517786189","https://openalex.org/W3213987435","https://openalex.org/W3023262859"],"abstract_inverted_index":{"This":[0],"review":[1],"outlines":[2],"neuron":[3,30,50,67,79],"tracing":[4,51,80],"in":[5],"various":[6],"scenarios":[7],"with":[8],"the":[9,13,23,37,45,59,72],"goal":[10],"to":[11],"help":[12],"community":[14],"understand":[15],"and":[16,19,26,76],"navigate":[17],"tools":[18],"resources.":[20],"We":[21,32,43],"describe":[22],"status,":[24],"examples":[25],"accessibility":[27],"of":[28,36,52,65],"automatic":[29],"tracing.":[31],"survey":[33],"recent":[34],"advances":[35],"increasingly":[38],"popular":[39],"deep-learning":[40],"enhanced":[41],"methods.":[42],"highlight":[44],"semi-automatic":[46],"methods":[47],"for":[48,78],"single":[49],"mammalian":[53],"whole":[54],"brains":[55],"as":[56,58],"well":[57],"resulting":[60],"datasets,":[61],"each":[62],"containing":[63],"thousands":[64],"full":[66],"morphologies.":[68],"Finally,":[69],"we":[70],"exemplify":[71],"commonly":[73],"used":[74],"datasets":[75],"metrics":[77],"bench":[81],"testing.":[82]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-03T22:45:19.894376","created_date":"2025-10-10T00:00:00"}