{"id":"https://openalex.org/W4307234790","doi":"https://doi.org/10.1093/bioinformatics/btac704","title":"GlycoEnzOnto: a GlycoEnzyme pathway and molecular function ontology","display_name":"GlycoEnzOnto: a GlycoEnzyme pathway and molecular function ontology","publication_year":2022,"publication_date":"2022-10-25","ids":{"openalex":"https://openalex.org/W4307234790","doi":"https://doi.org/10.1093/bioinformatics/btac704","pmid":"https://pubmed.ncbi.nlm.nih.gov/36282863"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/24/5413/47887000/btac704.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/24/5413/47887000/btac704.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070081153","display_name":"Theodore Groth","orcid":"https://orcid.org/0000-0003-4553-6899"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Theodore Groth","raw_affiliation_strings":["Department of Chemical and Biological Engineering, University at Buffalo, State University of New York , Buffalo, NY 14260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, University at Buffalo, State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084833749","display_name":"Alexander D. Diehl","orcid":"https://orcid.org/0000-0001-9990-8331"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander D Diehl","raw_affiliation_strings":["Department of Biomedical Informatics, University at Buffalo, State University of New York , Buffalo, NY 14260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University at Buffalo, State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054672110","display_name":"Rudiyanto Gunawan","orcid":"https://orcid.org/0000-0002-6480-7976"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rudiyanto Gunawan","raw_affiliation_strings":["Department of Chemical and Biological Engineering, University at Buffalo, State University of New York , Buffalo, NY 14260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, University at Buffalo, State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054244721","display_name":"Sriram Neelamegham","orcid":"https://orcid.org/0000-0002-1371-8500"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sriram Neelamegham","raw_affiliation_strings":["Department of Biomedical Engineering, University at Buffalo, State University of New York , Buffalo, NY 14260, USA","Department of Chemical and Biological Engineering, University at Buffalo, State University of New York , Buffalo, NY 14260, USA","Department of Medicine, University at Buffalo, State University of New York , Buffalo, NY 14260, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University at Buffalo, State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]},{"raw_affiliation_string":"Department of Chemical and Biological Engineering, University at Buffalo, State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]},{"raw_affiliation_string":"Department of Medicine, University at Buffalo, State University of New York , Buffalo, NY 14260, USA","institution_ids":["https://openalex.org/I63190737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5054244721"],"corresponding_institution_ids":["https://openalex.org/I63190737"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.736,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.84957863,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"38","issue":"24","first_page":"5413","last_page":"5420"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.6391681432723999},{"id":"https://openalex.org/keywords/nucleotide-sugar","display_name":"Nucleotide sugar","score":0.631401002407074},{"id":"https://openalex.org/keywords/glycosylation","display_name":"Glycosylation","score":0.6085711121559143},{"id":"https://openalex.org/keywords/glycosyltransferase","display_name":"Glycosyltransferase","score":0.5957858562469482},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5465368032455444},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.4683277904987335},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.42608627676963806},{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.4221426248550415},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.4179297387599945},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3765897750854492},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33682405948638916},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.2866095304489136},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.2783932089805603},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22761821746826172},{"id":"https://openalex.org/keywords/glycoprotein","display_name":"Glycoprotein","score":0.09887322783470154},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.0789247453212738}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.6391681432723999},{"id":"https://openalex.org/C26664279","wikidata":"https://www.wikidata.org/wiki/Q117973","display_name":"Nucleotide sugar","level":4,"score":0.631401002407074},{"id":"https://openalex.org/C2777313579","wikidata":"https://www.wikidata.org/wiki/Q898365","display_name":"Glycosylation","level":2,"score":0.6085711121559143},{"id":"https://openalex.org/C161019410","wikidata":"https://www.wikidata.org/wiki/Q67201373","display_name":"Glycosyltransferase","level":3,"score":0.5957858562469482},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5465368032455444},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.4683277904987335},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.42608627676963806},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.4221426248550415},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.4179297387599945},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3765897750854492},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33682405948638916},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.2866095304489136},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.2783932089805603},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22761821746826172},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.09887322783470154},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0789247453212738},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006031","descriptor_name":"Glycosylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006031","descriptor_name":"Glycosylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006031","descriptor_name":"Glycosylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/24/5413/47887000/btac704.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36282863","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36282863","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9750110","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9750110","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/24/5413/47887000/btac704.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G162988077","display_name":null,"funder_award_id":"U01CA221229","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2421118050","display_name":null,"funder_award_id":"HL103411","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G3298056745","display_name":null,"funder_award_id":"R01HL","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G3530239307","display_name":null,"funder_award_id":"NHLBI","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6041813789","display_name":null,"funder_award_id":"HL103411","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309370","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320338403","display_name":"Common Fund","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4307234790.pdf","grobid_xml":"https://content.openalex.org/works/W4307234790.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1512694863","https://openalex.org/W1989277387","https://openalex.org/W2018042261","https://openalex.org/W2020525459","https://openalex.org/W2069205495","https://openalex.org/W2102396102","https://openalex.org/W2103017472","https://openalex.org/W2129817935","https://openalex.org/W2130430382","https://openalex.org/W2147118358","https://openalex.org/W2159482845","https://openalex.org/W2170416222","https://openalex.org/W2184464034","https://openalex.org/W2321054102","https://openalex.org/W2521492299","https://openalex.org/W2530890748","https://openalex.org/W2802836269","https://openalex.org/W2806762528","https://openalex.org/W2807830322","https://openalex.org/W2918819576","https://openalex.org/W2924022056","https://openalex.org/W2953110573","https://openalex.org/W2965518110","https://openalex.org/W2981114078","https://openalex.org/W3020097905","https://openalex.org/W3046454618","https://openalex.org/W3094407181","https://openalex.org/W3095995867","https://openalex.org/W3134998733","https://openalex.org/W3136918052","https://openalex.org/W3138006986","https://openalex.org/W3184087830","https://openalex.org/W3211718555","https://openalex.org/W4231254854","https://openalex.org/W4294216483","https://openalex.org/W6752196985","https://openalex.org/W6752473154","https://openalex.org/W6765135662","https://openalex.org/W6798810649","https://openalex.org/W6803785435","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W197375192","https://openalex.org/W1988473330","https://openalex.org/W3151525282","https://openalex.org/W2378339845","https://openalex.org/W2031798358","https://openalex.org/W2492110942","https://openalex.org/W198820092","https://openalex.org/W4243084055","https://openalex.org/W4210516196","https://openalex.org/W86432284"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
