{"id":"https://openalex.org/W4304991009","doi":"https://doi.org/10.1093/bioinformatics/btac675","title":"Biomedical evidence engineering for data-driven discovery","display_name":"Biomedical evidence engineering for data-driven discovery","publication_year":2022,"publication_date":"2022-10-13","ids":{"openalex":"https://openalex.org/W4304991009","doi":"https://doi.org/10.1093/bioinformatics/btac675","pmid":"https://pubmed.ncbi.nlm.nih.gov/36227057"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac675","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac675","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/23/5270/48942579/btac675.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/23/5270/48942579/btac675.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067025788","display_name":"Sendong Zhao","orcid":"https://orcid.org/0000-0002-4676-1812"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Sendong Zhao","raw_affiliation_strings":["Department of Computer Science, College of Computer Science and Technology, Harbin Institute of Technology, Harbin 10065 , China"],"raw_orcid":"https://orcid.org/0000-0002-4676-1812","affiliations":[{"raw_affiliation_string":"Department of Computer Science, College of Computer Science and Technology, Harbin Institute of Technology, Harbin 10065 , China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102782488","display_name":"Aobo Wang","orcid":"https://orcid.org/0000-0003-1377-1106"},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Aobo Wang","raw_affiliation_strings":["Research School of Finance, Actuarial Studies and Statistics, College of Business and Economics, Australian National University, Canberra, ACT 2600 , Australia"],"raw_orcid":"https://orcid.org/0000-0003-1377-1106","affiliations":[{"raw_affiliation_string":"Research School of Finance, Actuarial Studies and Statistics, College of Business and Economics, Australian National University, Canberra, ACT 2600 , Australia","institution_ids":["https://openalex.org/I118347636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017671620","display_name":"Bing Qin","orcid":"https://orcid.org/0000-0002-2543-5604"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bing Qin","raw_affiliation_strings":["Department of Computer Science, College of Computer Science and Technology, Harbin Institute of Technology, Harbin 10065 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, College of Computer Science and Technology, Harbin Institute of Technology, Harbin 10065 , China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100455768","display_name":"Fei Wang","orcid":"https://orcid.org/0000-0001-9459-9461"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fei Wang","raw_affiliation_strings":["Department of Population Health Sciences, Weill Medical College, Cornell University , New York, NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Population Health Sciences, Weill Medical College, Cornell University , New York, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5067025788"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.395,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.55293132,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"38","issue":"23","first_page":"5270","last_page":"5278"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9344000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9344000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.018300000578165054,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.004900000058114529,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8368543386459351},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7616486549377441},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.5247359871864319},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.49457260966300964},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48616454005241394},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3944079875946045},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.2062799036502838},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18805909156799316}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8368543386459351},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7616486549377441},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.5247359871864319},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.49457260966300964},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48616454005241394},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3944079875946045},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.2062799036502838},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18805909156799316},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac675","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac675","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/23/5270/48942579/btac675.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36227057","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36227057","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac675","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac675","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/23/5270/48942579/btac675.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G3598264260","display_name":null,"funder_award_id":"2021ZD0113302","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6081050233","display_name":null,"funder_award_id":"62206079","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4304991009.pdf","grobid_xml":"https://content.openalex.org/works/W4304991009.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W1522301498","https://openalex.org/W1975061282","https://openalex.org/W2110693578","https://openalex.org/W2143017621","https://openalex.org/W2158822657","https://openalex.org/W2786858191","https://openalex.org/W2799453049","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2938224028","https://openalex.org/W2948035163","https://openalex.org/W2962966181","https://openalex.org/W2995785298","https://openalex.org/W3028004046","https://openalex.org/W3139580003","https://openalex.org/W4293583643","https://openalex.org/W4385245566","https://openalex.org/W6603694148","https://openalex.org/W6628905179","https://openalex.org/W6631190155","https://openalex.org/W6702212959","https://openalex.org/W6739901393","https://openalex.org/W6747404665","https://openalex.org/W6748324693","https://openalex.org/W6755207826","https://openalex.org/W6761345506","https://openalex.org/W6792439368"],"related_works":["https://openalex.org/W2389214306","https://openalex.org/W4235240664","https://openalex.org/W2965083567","https://openalex.org/W1838576100","https://openalex.org/W2095886385","https://openalex.org/W2089704382","https://openalex.org/W1983399550","https://openalex.org/W97075385","https://openalex.org/W2357523926","https://openalex.org/W3151146928"],"abstract_inverted_index":{"MOTIVATION:":[0],"With":[1],"the":[2,45],"rapid":[3],"development":[4],"of":[5,11,91,141,146],"precision":[6],"medicine,":[7],"a":[8,77,92,135],"large":[9],"amount":[10],"health":[12,17],"data":[13],"(such":[14],"as":[15],"electronic":[16],"records,":[18],"gene":[19],"sequencing,":[20],"medical":[21],"images,":[22],"etc.)":[23],"has":[24],"been":[25],"produced.":[26],"It":[27],"encourages":[28],"more":[29,31,86],"and":[30,60,97,108],"interest":[32],"in":[33,112,128],"data-driven":[34],"insight":[35],"discovery":[36],"from":[37,52,126],"these":[38],"data.":[39],"A":[40,116],"reasonable":[41],"way":[42],"to":[43,69,123,130],"verify":[44],"derived":[46],"insights":[47],"is":[48,58,67,121],"by":[49],"checking":[50],"evidence":[51,81,99,118,125],"biomedical":[53,80,93,113,142],"literature.":[54],"However,":[55],"manual":[56],"verification":[57],"inefficient":[59],"not":[61],"scalable.":[62],"Therefore,":[63],"an":[64,98],"intelligent":[65],"technique":[66],"necessary":[68],"solve":[70],"this":[71,84],"problem.":[72],"RESULTS:":[73],"This":[74],"article":[75],"introduces":[76],"framework":[78,89],"for":[79],"engineering,":[82],"addressing":[83],"problem":[85],"effectively.":[87],"The":[88,102],"consists":[90],"literature":[94,114,127],"retrieval":[95,103],"module":[96,104],"extraction":[100,119],"module.":[101],"ensembles":[105],"several":[106],"methods":[107],"achieves":[109],"state-of-the-art":[110],"performance":[111],"retrieval.":[115],"BERT-based":[117],"model":[120],"proposed":[122],"extract":[124],"response":[129],"queries.":[131],"Moreover,":[132],"we":[133],"create":[134],"dataset":[136],"with":[137],"1":[138],"million":[139],"examples":[140],"evidence,":[143],"10":[144],"000":[145],"which":[147],"are":[148,155],"manually":[149],"annotated.":[150],"AVAILABILITY":[151],"AND":[152],"IMPLEMENTATION:":[153],"Datasets":[154],"available":[156],"at":[157],"https://github.com/SendongZhao.":[158]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
