{"id":"https://openalex.org/W4301392675","doi":"https://doi.org/10.1093/bioinformatics/btac662","title":"<i>statgenMPP</i>: an R package implementing an IBD-based mixed model approach for QTL mapping in a wide range of multi-parent populations","display_name":"<i>statgenMPP</i>: an R package implementing an IBD-based mixed model approach for QTL mapping in a wide range of multi-parent populations","publication_year":2022,"publication_date":"2022-10-03","ids":{"openalex":"https://openalex.org/W4301392675","doi":"https://doi.org/10.1093/bioinformatics/btac662","pmid":"https://pubmed.ncbi.nlm.nih.gov/36193999"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac662","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac662","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/22/5134/47153744/btac662.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/22/5134/47153744/btac662.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022568350","display_name":"Wenhao Li","orcid":"https://orcid.org/0000-0001-5719-5775"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Wenhao Li","raw_affiliation_strings":["Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-5719-5775","affiliations":[{"raw_affiliation_string":"Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027860369","display_name":"Martin P. Boer","orcid":"https://orcid.org/0000-0002-1879-4588"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Martin P Boer","raw_affiliation_strings":["Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014125731","display_name":"Bart-Jan van Rossum","orcid":"https://orcid.org/0000-0002-8673-2514"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Bart-Jan van Rossum","raw_affiliation_strings":["Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048397336","display_name":"Chaozhi Zheng","orcid":"https://orcid.org/0000-0001-6030-3933"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Chaozhi Zheng","raw_affiliation_strings":["Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-6030-3933","affiliations":[{"raw_affiliation_string":"Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108531816","display_name":"Ronny V.L. Joosen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210091260","display_name":"Rijk Zwaan (Netherlands)","ror":"https://ror.org/00dzkep57","country_code":"NL","type":"company","lineage":["https://openalex.org/I4210091260"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ronny V L Joosen","raw_affiliation_strings":["Rijk Zwaan Breeding B.V. , De Lier 2678 ZG, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rijk Zwaan Breeding B.V. , De Lier 2678 ZG, The Netherlands","institution_ids":["https://openalex.org/I4210091260"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055728337","display_name":"Fred A. van Eeuwijk","orcid":"https://orcid.org/0000-0003-3672-2921"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Fred A van Eeuwijk","raw_affiliation_strings":["Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biometris, Wageningen University and Research Center , Wageningen, 6700 AC, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5027860369"],"corresponding_institution_ids":["https://openalex.org/I913481162"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.3453,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.81791058,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"38","issue":"22","first_page":"5134","last_page":"5136"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.007799999788403511,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.004699999932199717,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identity-by-descent","display_name":"Identity by descent","score":0.7618582248687744},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.719825267791748},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6648688912391663},{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.6520220041275024},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5653402209281921},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5228508114814758},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5026264190673828},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.49384933710098267},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.48082101345062256},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.45419883728027344},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.41977429389953613},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1792563796043396},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13994815945625305},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13876286149024963},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.13658958673477173},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08386796712875366}],"concepts":[{"id":"https://openalex.org/C178221405","wikidata":"https://www.wikidata.org/wiki/Q5988338","display_name":"Identity by descent","level":5,"score":0.7618582248687744},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.719825267791748},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6648688912391663},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.6520220041275024},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5653402209281921},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5228508114814758},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5026264190673828},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.49384933710098267},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.48082101345062256},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.45419883728027344},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.41977429389953613},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1792563796043396},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13994815945625305},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13876286149024963},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.13658958673477173},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08386796712875366},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac662","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac662","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/22/5134/47153744/btac662.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36193999","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36193999","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:library.wur.nl:wurpubs/605659","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/statgenmpp-an-r-package-implementing-an-ibd-based-mixed-model-app","pdf_url":null,"source":{"id":"https://openalex.org/S4210201231","display_name":"Socio-Environmental Systems Modeling","issn_l":"2663-3027","issn":["2663-3027"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"Article/Letter to editor"},{"id":"pmh:oai:pubmedcentral.nih.gov:9665859","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9665859","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac662","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac662","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/22/5134/47153744/btac662.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4301392675.pdf","grobid_xml":"https://content.openalex.org/works/W4301392675.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W2020128789","https://openalex.org/W2043976905","https://openalex.org/W2046076301","https://openalex.org/W2048584789","https://openalex.org/W2070260544","https://openalex.org/W2107002746","https://openalex.org/W2131354461","https://openalex.org/W2138098072","https://openalex.org/W2271664060","https://openalex.org/W2278115202","https://openalex.org/W2483883060","https://openalex.org/W2529918058","https://openalex.org/W2607746504","https://openalex.org/W2756575268","https://openalex.org/W2775447739","https://openalex.org/W3039516501","https://openalex.org/W3049369159","https://openalex.org/W3135178878","https://openalex.org/W4252650266","https://openalex.org/W6781966712","https://openalex.org/W6791610582"],"related_works":["https://openalex.org/W4376877853","https://openalex.org/W1493891899","https://openalex.org/W4250928611","https://openalex.org/W4232280318","https://openalex.org/W166480398","https://openalex.org/W167327709","https://openalex.org/W4387839566","https://openalex.org/W4210922265","https://openalex.org/W2084742289","https://openalex.org/W2491403535"],"abstract_inverted_index":{"MOTIVATION:":[0],"Multi-parent":[1],"populations":[2,93],"(MPPs)":[3],"are":[4,33,122],"popular":[5],"for":[6,30,36,56,74],"QTL":[7,31,57,75],"mapping":[8,32,76,87],"because":[9],"they":[10],"combine":[11],"wide":[12,79],"genetic":[13,91],"diversity":[14],"in":[15,59,77],"parents":[16],"with":[17,98],"easy":[18],"control":[19],"of":[20,27,66,81],"population":[21],"structure,":[22],"but":[23],"a":[24,49,78],"limited":[25],"number":[26],"software":[28],"tools":[29],"specifically":[34],"developed":[35,42],"general":[37],"MPP":[38,82],"designs.":[39],"RESULTS:":[40],"We":[41],"an":[43],"R":[44,106],"package":[45,62,107],"called":[46],"statgenMPP,":[47],"adopting":[48],"unified":[50],"identity-by-descent":[51],"(IBD)-based":[52],"mixed":[53,69],"model":[54,70],"approach":[55],"analysis":[58],"MPPs.":[60],"The":[61,105],"offers":[63],"easy-to-use":[64],"functionalities":[65],"IBD":[67],"calculations,":[68],"solutions":[71],"and":[72,94,111],"visualizations":[73],"range":[80],"designs,":[83],"including":[84],"diallele,":[85],"nested-association":[86],"populations,":[88],"multi-parent":[89],"advanced":[90],"inter-cross":[92],"other":[95],"complicated":[96],"MPPs":[97],"known":[99],"crossing":[100],"schemes.":[101],"AVAILABILITY":[102],"AND":[103],"IMPLEMENTATION:":[104],"statgenMPP":[108],"is":[109],"open-source":[110],"freely":[112],"available":[113,123],"on":[114],"CRAN":[115],"at":[116,124],"https://CRAN.R-project.org/package=statgenMPP.":[117],"SUPPLEMENTARY":[118],"INFORMATION:":[119],"Supplementary":[120],"data":[121],"Bioinformatics":[125],"online.":[126]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2022-10-05T00:00:00"}
